Conservation of cofitness between b3822 and b2892 in Escherichia coli BW25113

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.47 1
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ low > 52
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 57
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 85
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 0.99 ECD_02724 ssDNA exonuclease, 5 0.73 10
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.63 6
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.89 BWI76_RS23805 ssDNA exonuclease RecJ 0.21 58
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.71 10
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.52 51
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.75 1
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.91 1
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.83 1
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.69 12
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.53 15
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.55 PP_1477 ssDNA-specific exonuclease RecJ low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.29 46
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.51 1
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.24 44
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.57 PS417_22855 ssDNA exonuclease RecJ low > 88
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.24 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ low > 71
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.47 4
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.51 10
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.57 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.57 Psyr_1298 exonuclease RecJ 0.25 61
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.17 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.79 1
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.50 HP15_766 bacterial RecJ exonuclease low > 73
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.24 Atu1586 single-stranded-DNA-specific exonuclease — —
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.24 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ — —
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ low > 79
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.70 1
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.19 SMc00292 single-stranded-DNA-specific exonuclease — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.40 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ low > 80
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ low > 56
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ low > 153
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ — —
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ — —
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease low > 113
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.40 H281DRAFT_00488 exonuclease RecJ — —
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) — —
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ low > 81
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ low > 61
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.24 Rru_A2408 RecJ exonuclease (NCBI) — —
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ — —

Not shown: 7 genomes with orthologs for b3822 only; 4 genomes with orthologs for b2892 only