| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 1.0 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.70 | 18 |
| Azospirillum sp. SherDot2 | 0.77 | MPMX19_01528 | | Replication-associated recombination protein A | 0.76 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Azospirillum brasilense Sp245 | 0.75 | AZOBR_RS06885 | | ATPase AAA | 0.77 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.73 | AMB_RS17620 | | replication-associated recombination protein A | 0.79 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.65 | SMc01279 | | recombination factor protein RarA | 0.69 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.64 | TX73_016655 | | replication-associated recombination protein A | 0.71 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Bosea sp. OAE506 | 0.64 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.70 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Rhizobium sp. OAE497 | 0.63 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.71 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Agrobacterium fabrum C58 | 0.62 | Atu1914 | | ATPase, AAA family protein | 0.69 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.62 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.69 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.61 | A4249_RS07890 | | replication-associated recombination protein A | 0.69 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.61 | PGA1_c01930 | | replication-associated recombination protein A | 0.69 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | low | > 62 |
| Caulobacter crescentus NA1000 | 0.61 | CCNA_01342 | | ATPase, AAA family | 0.70 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.61 | CCNA_01342 | | ATPase, AAA family | 0.70 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.58 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.32 | 30 |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.58 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.60 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.60 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.27 | 21 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_22185 | | recombination factor protein RarA | 0.60 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_00270 | | Replication-associated recombination protein RarA | 0.59 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS17320 | | replication-associated recombination protein A | 0.58 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_3177 | | Recombination protein MgsA | 0.60 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_3177 | | Recombination protein MgsA | 0.60 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_02606 | | Replication-associated recombination protein A | 0.61 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.60 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS17545 | | replication-associated recombination protein A | 0.58 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_27640 | | recombination factor protein RarA | 0.60 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.60 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas putida KT2440 | 0.46 | PP_4002 | | DNA-dependent ATPase required for recombination | 0.61 | PP_4008 | | ATP-dependent serine protease | low | > 96 |
| Pseudomonas simiae WCS417 | 0.46 | PS417_16480 | | recombination factor protein RarA | 0.61 | PS417_16510 | | Clp protease ClpX | low | > 88 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS03415 | | replication-associated recombination protein A | 0.58 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS18520 | | replication-associated recombination protein A | 0.60 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS18520 | | replication-associated recombination protein A | 0.60 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Variovorax sp. SCN45 | 0.45 | GFF6034 | | Replication-associated recombination protein RarA | 0.58 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS05100 | | ATPase AAA | 0.58 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS04355 | | recombination factor protein RarA | 0.58 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.45 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.58 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS07835 | | replication-associated recombination protein A | 0.57 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.59 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.59 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.59 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Shewanella amazonensis SB2B | 0.45 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.59 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS09525 | | replication-associated recombination protein A | 0.58 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.58 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.58 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS09515 | | ATPase AAA | 0.61 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_00180 | | Recombination protein MgsA | 0.58 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS09670 | | recombination factor protein RarA | 0.58 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_1817 | | recombination factor protein RarA | 0.61 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS11735 | | replication-associated recombination protein A | 0.58 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.57 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.58 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 73 |
| Rahnella sp. WP5 | 0.43 | EX31_RS18515 | | replication-associated recombination protein A | 0.58 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Shewanella oneidensis MR-1 | 0.43 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.58 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.43 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.58 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01554 | | Replication-associated recombination protein A | 0.58 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS09755 | | replication-associated recombination protein A | 0.57 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.59 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Dechlorosoma suillum PS | 0.43 | Dsui_1694 | | AAA ATPase | 0.60 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 51 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.58 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_08570 | | replication-associated recombination protein A | 0.58 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.58 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.58 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.58 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.58 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia fergusonii Becca | 0.42 | EFB2_03169 | | Replication-associated recombination protein A | 0.58 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.58 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.58 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS09930 | | replication-associated recombination protein A | 0.58 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.58 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.58 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.58 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.58 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli BW25113 | 0.42 | b0892 | ycaJ | recombination protein (NCBI) | 0.58 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.42 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.58 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 61 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS09620 | | replication-associated recombination protein A | 0.58 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.58 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.58 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS12345 | | replication-associated recombination protein A | 0.58 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.41 | MIT1002_02178 | | Replication-associated recombination protein A | 0.59 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Pantoea sp. MT58 | 0.41 | IAI47_12900 | | replication-associated recombination protein A | 0.58 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_05630 | | replication-associated recombination protein A | 0.58 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.37 | HMPREF1058_RS09040 | | AAA family ATPase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.39 | ABI39_RS20200 | | replication-associated recombination protein A | 0.37 | ABI39_RS03345 | | AAA family ATPase | low | > 72 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_02987 | | Replication-associated recombination protein A | 0.57 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.58 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 90 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.50 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1686 | | ATPase, AAA family (TIGR) | 0.50 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | low | > 55 |
Not shown: 12 genomes with orthologs for Rru_A2660 only; 1 genomes with orthologs for Rru_A2109 only