| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3250 | | Helix-turn-helix motif protein | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3250 | | Helix-turn-helix motif protein | insig. | 100 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_23290 | | Cro/Cl family transcriptional regulator | sig. | 75 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03682 | | HTH-type transcriptional regulator SutR | cofit | 74 | 100 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5820 | | Transcriptional regulator, Cro/CI family | strong | 73 | 100 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_541 | | Transcriptional regulator, Cro/CI family | insig. | 74 | 100 |
| o | Pseudomonas orientalis W4I3 | QF045_RS18555 | | XRE family transcriptional regulator | cofit | 74 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_16820 | | Cro/Cl family transcriptional regulator | no data | 72 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_21480 | | Cro/Cl family transcriptional regulator | strong | 74 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_02400 | | hypothetical protein | sig. | 72 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS18830 | | helix-turn-helix domain-containing protein | insig. | 72 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18830 | | helix-turn-helix domain-containing protein | strong | 72 | 100 |
| o | Pseudomonas sp. SVBP6 | COO64_RS19420 | | helix-turn-helix domain-containing protein | insig. | 65 | 100 |
| o | Pseudomonas sp. BP01 | JOY50_RS12560 | | helix-turn-helix domain-containing protein | insig. | 66 | 100 |
| o | Pseudomonas putida KT2440 | PP_2232 | | XRE family transcriptional regulator | sig. | 65 | 95 |
| | Pseudomonas sp. DMC3 | GFF1740 | | hypothetical protein | cofit | 72 | 78 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS19145 | | XRE family transcriptional regulator | strong | 58 | 97 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_06470 | | Cro/Cl family transcriptional regulator | strong | 58 | 97 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS53270 | | XRE family transcriptional regulator | strong | 58 | 97 |
| o | Sphingobium sp. HT1-2 | GFF1865 | | Transcriptional regulator, Xre family | cofit | 53 | 96 |
| o | Serratia liquefaciens MT49 | IAI46_09015 | | helix-turn-helix transcriptional regulator | no data | 52 | 96 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS01325 | | XRE family transcriptional regulator | insig. | 45 | 97 |
| o | Rhizobium sp. OAE497 | ABIE40_RS21490 | | XRE family transcriptional regulator | sig. | 45 | 94 |
| | Ralstonia solanacearum GMI1000 | RS_RS23520 | | XRE family transcriptional regulator | no data | 36 | 92 |
| o | Ralstonia solanacearum GMI1000 | RS_RS23650 | | XRE family transcriptional regulator | no data | 36 | 92 |
| o | Klebsiella michiganensis M5al | BWI76_RS13955 | | hypothetical protein | insig. | 37 | 93 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_3141 | | transcriptional regulator, XRE family with cupin sensor | insig. | 34 | 92 |
| o | Enterobacter sp. TBS_079 | MPMX20_03983 | | hypothetical protein | insig. | 33 | 92 |
| | Pseudomonas sp. DMC3 | GFF1048 | | HTH-type transcriptional regulator SutR | no data | 31 | 92 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2660 | | Putative transcriptional regulator | insig. | 31 | 92 |
| o | Pantoea sp. MT58 | IAI47_18980 | | helix-turn-helix domain-containing protein | sig. | 31 | 93 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23675 | | hydroxyacid dehydrogenase | insig. | 31 | 89 |
| | Acinetobacter baumannii LAC-4 | RR41_RS01095 | | XRE family transcriptional regulator | insig. | 32 | 86 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4417 | | Transcriptional regulator | insig. | 31 | 89 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS07555 | | helix-turn-helix domain-containing protein | cofit | 33 | 94 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_05560 | | XRE family transcriptional regulator | insig. | 30 | 94 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27170 | | XRE family transcriptional regulator | strong | 27 | 92 |
| o | Rahnella sp. WP5 | EX31_RS05710 | | helix-turn-helix transcriptional regulator | insig. | 29 | 92 |
| | Pantoea sp. MT58 | IAI47_10265 | | helix-turn-helix domain-containing protein | insig. | 34 | 90 |
| | Enterobacter sp. TBS_079 | MPMX20_04570 | | HTH-type transcriptional regulator SutR | strong | 27 | 84 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11340 | | hydroxyacid dehydrogenase | no data | 30 | 88 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS17955 | | XRE family transcriptional regulator | insig. | 30 | 94 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS59195 | | XRE family transcriptional regulator | sig. | 30 | 94 |
| | Pseudomonas orientalis W4I3 | QF045_RS17975 | | XRE family transcriptional regulator | cofit | 30 | 87 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_4383 | | transcriptional regulator, XRE family with cupin sensor | strong | 29 | 84 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c29470 | | puttative helix-turn-helix protein | insig. | 31 | 84 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18295 | | helix-turn-helix domain-containing protein | insig. | 29 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18295 | | helix-turn-helix domain-containing protein | sig. | 29 | 87 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS05870 | | helix-turn-helix domain-containing protein | cofit | 34 | 90 |
| | Rhodopseudomonas palustris CGA009 | TX73_013495 | | XRE family transcriptional regulator | insig. | 33 | 85 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS06145 | | XRE family transcriptional regulator | insig. | 31 | 92 |
| o | Dickeya dianthicola 67-19 | HGI48_RS18970 | | helix-turn-helix transcriptional regulator | cofit | 28 | 90 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02314 | | hypothetical protein | cofit | 26 | 92 |
| o | Dickeya dianthicola ME23 | DZA65_RS20080 | | helix-turn-helix transcriptional regulator | insig. | 27 | 90 |
| | Rahnella sp. WP5 | EX31_RS03010 | | helix-turn-helix domain-containing protein | sig. | 29 | 84 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_08380 | | DNA-binding protein | cofit | 32 | 85 |
| | Erwinia tracheiphila SCR3 | LU632_RS22230 | | helix-turn-helix domain-containing protein | cofit | 32 | 85 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1308 | | Transcriptional regulator | no data | 28 | 92 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS03720 | | XRE family transcriptional regulator | insig. | 31 | 83 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_09135 | | transcriptional regulator | insig. | 25 | 84 |
| | Pseudomonas sp. SVBP6 | COO64_RS07815 | | helix-turn-helix domain-containing protein | insig. | 30 | 90 |
| | Rhodospirillum rubrum S1H | Rru_A2614 | | Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) | insig. | 32 | 85 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2038 | | transcriptional regulator, XRE family with cupin sensor domain | strong | 28 | 94 |
| o | Alteromonas macleodii MIT1002 | MIT1002_00748 | | DNA-binding transcriptional repressor PuuR | insig. | 27 | 92 |
| o | Azospirillum sp. SherDot2 | MPMX19_02874 | | HTH-type transcriptional regulator SutR | insig. | 30 | 90 |
| | Pectobacterium carotovorum WPP14 | HER17_RS21700 | | XRE family transcriptional regulator | cofit | 30 | 89 |
| | Methanococcus maripaludis S2 | MMP_RS01155 | | XRE family transcriptional regulator | strong | 27 | 86 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS18270 | | XRE family transcriptional regulator | insig. | 25 | 87 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS15610 | | helix-turn-helix transcriptional regulator | strong | 27 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS15610 | | helix-turn-helix transcriptional regulator | strong | 27 | 87 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2607 | | transcriptional regulator, XRE family with cupin sensor | sig. | 31 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_24090 | | DNA-binding protein | insig. | 27 | 87 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2260 | | Transcriptional regulator | insig. | 25 | 84 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2595 | | Transcriptional regulator yidN, Cro/CI family | insig. | 28 | 92 |
| o | Shewanella sp. ANA-3 | Shewana3_0319 | | XRE family transcriptional regulator (RefSeq) | strong | 27 | 90 |
| o | Variovorax sp. SCN45 | GFF5178 | | Transcriptional regulator, Xre-family with cupin domain | insig. | 29 | 93 |
| | Methanococcus maripaludis S2 | MMP_RS00545 | | XRE family transcriptional regulator | insig. | 29 | 79 |
| | Serratia liquefaciens MT49 | IAI46_11440 | | helix-turn-helix transcriptional regulator | cofit | 29 | 89 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1223 | | Cupin domain/Helix-turn-helix | insig. | 27 | 92 |
| o | Methanococcus maripaludis JJ | MMJJ_RS04940 | | XRE family transcriptional regulator | insig. | 29 | 79 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_09830 | | XRE family transcriptional regulator | insig. | 29 | 85 |
| | Escherichia coli ECRC100 | OKFHMN_01605 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| | Escherichia coli ECRC101 | MCAODC_16335 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| | Escherichia coli ECRC102 | NIAGMN_25740 | sutR | DNA-binding transcriptional regulator SutR | no data | 28 | 89 |
| | Escherichia coli ECRC98 | JDDGAC_04095 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| | Escherichia coli ECRC99 | KEDOAH_26835 | sutR | DNA-binding transcriptional regulator SutR | no data | 28 | 89 |
| | Klebsiella michiganensis M5al | BWI76_RS00575 | | DNA-binding protein | strong | 24 | 84 |
| | Serratia liquefaciens MT49 | IAI46_12755 | | helix-turn-helix transcriptional regulator | no data | 29 | 84 |
| | Azospirillum sp. SherDot2 | MPMX19_02581 | | HTH-type transcriptional regulator SutR | insig. | 26 | 88 |
| o | Escherichia coli BL21 | ECD_01392 | | putative DNA-binding transcriptional regulator | no data | 28 | 89 |
| o | Escherichia coli ECOR27 | NOLOHH_19280 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| o | Escherichia coli ECRC62 | BNILDI_17730 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02281 | | HTH-type transcriptional regulator SutR | insig. | 28 | 89 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS08275 | | DNA-binding transcriptional regulator SutR | no data | 28 | 89 |
| o | Escherichia coli BW25113 | b1434 | ydcN | predicted DNA-binding transcriptional regulator (NCBI) | insig. | 28 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS06760 | | XRE family transcriptional regulator | insig. | 28 | 85 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS20500 | | transcriptional regulator | insig. | 30 | 87 |
| | Escherichia coli ECOR38 | HEPCGN_26215 | sutR | DNA-binding transcriptional regulator SutR | insig. | 28 | 89 |
| | Rhizobium sp. OAE497 | ABIE40_RS01060 | | XRE family transcriptional regulator | insig. | 27 | 85 |
| | Rahnella sp. WP5 | EX31_RS21645 | | XRE family transcriptional regulator | insig. | 30 | 91 |