| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_03695 | | hypothetical protein | insig. | 100 | 100 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS11000 | | HD domain-containing protein | insig. | 34 | 95 |
| | Xanthobacter sp. DMC5 | GFF3102 | | hypothetical protein | insig. | 38 | 89 |
| | Rhodopseudomonas palustris CGA009 | TX73_018975 | | HD domain-containing protein | insig. | 36 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS11055 | | phosphohydrolase | insig. | 36 | 78 |
| | Azospirillum sp. SherDot2 | MPMX19_00914 | | hypothetical protein | insig. | 36 | 78 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS06775 | | hypothetical protein | insig. | 44 | 53 |
| | Serratia liquefaciens MT49 | IAI46_00415 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | insig. | 31 | 92 |
| | Pantoea sp. MT58 | IAI47_18680 | | HD domain-containing protein | insig. | 36 | 68 |
| | Dickeya dianthicola ME23 | DZA65_RS16995 | | HD domain-containing protein | insig. | 35 | 53 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1377 | | metal dependent phosphohydrolase | strong | 31 | 72 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS03155 | | HD domain-containing protein | cofit | 33 | 70 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15965 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | insig. | 32 | 92 |
| | Erwinia amylovora T8 | OLJFJH_04905 | | GTP pyrophosphokinase | insig. | 32 | 65 |
| | Dickeya dianthicola 67-19 | HGI48_RS15920 | | HD domain-containing protein | insig. | 33 | 53 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_10050 | | GTP pyrophosphokinase | cofit | 35 | 56 |
| | Erwinia tracheiphila SCR3 | LU632_RS00230 | | HD domain-containing protein | insig. | 35 | 56 |
| | Acinetobacter baumannii LAC-4 | RR41_RS01655 | | HD domain-containing protein | strong | 31 | 84 |
| | Fusobacterium nucleatum SB010 | HUW76_09030 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 29 | 83 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS00990 | | HD domain-containing protein | insig. | 33 | 65 |
| | Variovorax sp. SCN45 | GFF1395 | | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II | insig. | 44 | 57 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS15715 | | HD domain-containing protein | cofit | 35 | 68 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS08605 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | cofit | 33 | 81 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0574 | | (p)ppGpp synthetase, RelA/SpoT family | no data | 29 | 71 |
| | Shewanella oneidensis MR-1 | SO0359 | spoT | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file) | strong | 30 | 74 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2083 | relA | GTP pyrophosphokinase (TIGR) | sig. | 30 | 74 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04004 | | (p)ppGpp synthetase I, SpoT/RelA | strong | 40 | 46 |
| | Paraburkholderia graminis OAS925 | ABIE53_003230 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 33 | 72 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09660 | | RelA/SpoT family protein | strong | 28 | 79 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS13870 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | cofit | 34 | 48 |
| | Dickeya dadantii 3937 | DDA3937_RS02485 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | insig. | 34 | 53 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS03315 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 34 | 48 |
| | Ralstonia solanacearum UW163 | UW163_RS10410 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | insig. | 34 | 48 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS15225 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 34 | 48 |
| | Ralstonia solanacearum GMI1000 | RS_RS10800 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 34 | 48 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS09710 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 30 | 57 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS14060 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 30 | 57 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS15305 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 30 | 72 |
| | Pseudomonas putida KT2440 | PP_5302 | | bifunctional (p)ppGpp synthase/hydrolase | no data | 31 | 72 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3998 | | GTP pyrophosphokinase (NCBI ptt file) | no data | 30 | 57 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS03665 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | insig. | 38 | 46 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS04920 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 34 | 48 |
| | Pseudomonas sp. BP01 | JOY50_RS08985 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | cofit | 31 | 72 |
| | Methylophilus sp. DMC18 | GFF2126 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | insig. | 29 | 74 |
| | Shewanella sp. ANA-3 | Shewana3_3812 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | strong | 29 | 74 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0194 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | strong | 27 | 79 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04817 | | RelA/SpoT family protein | no data | 30 | 57 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS09205 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 30 | 57 |
| | Azospirillum brasilense Sp245 | AZOBR_RS22045 | | GTP pyrophosphokinase | insig. | 33 | 49 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c01010 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT | strong | 26 | 69 |
| | Azospirillum sp. SherDot2 | MPMX19_00838 | | GTP pyrophosphokinase rsh | sig. | 41 | 33 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS10635 | | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 36 | 46 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS03095 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 34 | 48 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS04420 | | RelA/SpoT family protein | strong | 30 | 57 |
| | Shewanella amazonensis SB2B | Sama_0264 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | strong | 29 | 71 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS12580 | spoT;go_function=GTP | bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 29 | 72 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26765 | | bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 29 | 72 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS49545 | spoT;go_function=GTP | bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 29 | 72 |
| | Cellulophaga baltica 18 | M666_RS10915 | | RelA/SpoT family protein | cofit | 34 | 48 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3915.1 | | GTP pyrophosphokinase (EC 2.7.6.5) | insig. | 33 | 71 |
| | Alteromonas macleodii MIT1002 | MIT1002_00108 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | strong | 30 | 74 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS11850 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 35 | 46 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1034 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | no data | 35 | 48 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0787 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | strong | 29 | 59 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11400 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 31 | 48 |
| | Acinetobacter radioresistens SK82 | MPMX26_02796 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | strong | 28 | 85 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00034 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | no data | 30 | 72 |
| | Variovorax sp. OAS795 | ABID97_RS23670 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | no data | 35 | 48 |
| | Variovorax sp. SCN45 | GFF2375 | | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II | no data | 35 | 48 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS15610 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 31 | 48 |
| | Pseudomonas sp. SVBP6 | COO64_RS01555 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 30 | 72 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0209 | | RelA/SpoT protein | no data | 30 | 72 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0209 | | RelA/SpoT protein | no data | 30 | 72 |
| | Pseudomonas orientalis W4I3 | QF045_RS02185 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 30 | 72 |
| | Pseudomonas simiae WCS417 | PS417_27830 | | (p)ppGpp synthetase | no data | 30 | 72 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_09280 | | (p)ppGpp synthetase | no data | 30 | 72 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 30 | 72 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS29510 | | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 30 | 72 |
| | Erwinia amylovora T8 | OLJFJH_05560 | | bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase | sig. | 29 | 66 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0831 | | hypothetical protein | insig. | 35 | 47 |
| | Pseudomonas stutzeri RCH2 | Psest_3817 | | (p)ppGpp synthetase, RelA/SpoT family | no data | 30 | 72 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2113 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | no data | 30 | 72 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS05505 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | cofit | 29 | 75 |
| | Cellulophaga baltica 18 | M666_RS04895 | | HD domain-containing protein | insig. | 26 | 97 |
| | Caulobacter crescentus NA1000 | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | strong | 31 | 48 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01622 | | Rsh ppGpp hydrolase-synthetase | cofit | 31 | 48 |
| | Pseudomonas sp. RS175 | PFR28_04424 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | no data | 30 | 67 |
| | Pseudomonas segetis P6 | ACVTMO_RS00180 | spoT | bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | no data | 30 | 72 |
| | Pseudomonas sp. DMC3 | GFF419 | | Bifunctional (p)ppGpp synthase/hydrolase SpoT | no data | 30 | 72 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_780 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | no data | 30 | 72 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_12480 | | (p)ppGpp synthetase | no data | 30 | 72 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4361 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | no data | 30 | 72 |
| | Rhodospirillum rubrum S1H | Rru_A1856 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA (NCBI) | no data | 31 | 48 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS14485 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | strong | 30 | 48 |
| | Shewanella loihica PV-4 | Shew_3499 | | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) | strong | 27 | 74 |
| | Mycobacterium tuberculosis H37Rv | Rv2583c | | Probable GTP pyrophosphokinase RelA (ATP:GTP 3'-pyrophosphotransferase) (PPGPP synthetase I) ((P)PPGPP synthetase) (GTP diphosphokinase) | strong | 33 | 42 |
| | Dechlorosoma suillum PS | Dsui_0500 | | (p)ppGpp synthetase, RelA/SpoT family | strong | 29 | 60 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_01425 | | RelA/SpoT family protein | strong | 29 | 48 |
| | Pseudomonas sp. S08-1 | OH686_13550 | | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II | insig. | 29 | 72 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_06675 | | Guanosine polyphosphate pyrophosphohydrolase | insig. | 29 | 58 |