Homologs of hfq from Escherichia coli ECRC99

hfq: RNA chaperone Hfq
SEED: RNA-binding protein Hfq
KEGG: host factor-I protein

93 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli BL21 ECD_04039 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication strong 100 100
o Escherichia fergusonii Becca EFB2_04363 RNA-binding protein Hfq insig. 100 100
o Escherichia coli ECOR27 NOLOHH_04520 hfq RNA chaperone Hfq cofit 100 100
o Escherichia coli ECOR38 HEPCGN_10485 hfq RNA chaperone Hfq sig. 100 100
o Escherichia coli ECRC100 OKFHMN_12255 hfq RNA chaperone Hfq cofit 100 100
o Escherichia coli ECRC101 MCAODC_02770 hfq RNA chaperone Hfq sig. 100 100
o Escherichia coli ECRC102 NIAGMN_10105 hfq RNA chaperone Hfq strong 100 100
o Escherichia coli ECRC62 BNILDI_06970 hfq RNA chaperone Hfq strong 100 100
o Escherichia coli ECRC98 JDDGAC_15895 hfq RNA chaperone Hfq cofit 100 100
  Escherichia coli ECRC99 KEDOAH_15900 hfq RNA chaperone Hfq no data 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03870 RNA-binding protein Hfq sig. 100 100
o Escherichia coli Nissle 1917 ECOLIN_RS24230 RNA chaperone Hfq cofit 100 100
o Escherichia coli BW25113 b4172 hfq RNA-binding protein Hfq (NCBI) strong 100 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF825 RNA-binding protein Hfq sig. 94 100
o Enterobacter asburiae PDN3 EX28DRAFT_3369 RNA chaperone Hfq sig. 93 100
o Enterobacter sp. TBS_079 MPMX20_00453 RNA-binding protein Hfq strong 92 100
o Klebsiella michiganensis M5al BWI76_RS02535 RNA-binding protein Hfq no data 92 100
o Erwinia tracheiphila SCR3 LU632_RS02055 hfq RNA chaperone Hfq no data 88 100
o Rahnella sp. WP5 EX31_RS08820 RNA chaperone Hfq strong 82 100
o Pectobacterium carotovorum WPP14 HER17_RS02585 RNA chaperone Hfq strong 86 100
o Serratia liquefaciens MT49 IAI46_01625 RNA chaperone Hfq strong 84 100
o Dickeya dianthicola 67-19 HGI48_RS18545 RNA chaperone Hfq strong 80 100
o Dickeya dianthicola ME23 DZA65_RS19680 RNA chaperone Hfq sig. 80 100
o Dickeya dadantii 3937 DDA3937_RS18610 RNA chaperone Hfq strong 80 100
o Pantoea sp. MT58 IAI47_02590 RNA chaperone Hfq strong 85 100
  Vibrio cholerae E7946 ATCC 55056 CSW01_01835 RNA-binding protein Hfq no data 93 73
o Shewanella loihica PV-4 Shew_0566 RNA chaperone Hfq (RefSeq) insig. 79 88
o Shewanella amazonensis SB2B Sama_3025 host factor-I protein (RefSeq) no data 75 100
  Shewanella sp. ANA-3 Shewana3_0597 RNA-binding protein Hfq (RefSeq) no data 89 75
  Shewanella oneidensis MR-1 SO0603 hfq host factor-I protein (NCBI ptt file) strong 89 75
  Alteromonas macleodii MIT1002 MIT1002_03788 Host factor-I protein strong 88 71
  Pseudomonas sp. S08-1 OH686_09470 RNA chaperone Hfq strong 86 75
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3120.1 RNA-binding protein Hfq insig. 70 98
  Kangiella aquimarina DSM 16071 B158DRAFT_1952 RNA chaperone Hfq strong 90 70
  Pseudomonas stutzeri RCH2 Psest_0683 RNA chaperone Hfq no data 91 67
o Rhodanobacter sp. FW510-T8 OKGIIK_06630 hfq RNA chaperone Hfq insig. 68 97
o Lysobacter sp. OAE881 ABIE51_RS06540 RNA chaperone Hfq strong 90 67
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08365 RNA chaperone Hfq no data 82 75
  Rhodanobacter denitrificans MT42 LRK55_RS00400 RNA chaperone Hfq cofit 88 67
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00630 RNA chaperone Hfq sig. 88 67
  Dechlorosoma suillum PS Dsui_3137 RNA chaperone Hfq no data 81 73
  Pseudomonas putida KT2440 PP_4894 RNA-binding protein Hfq no data 87 67
  Castellaniella sp019104865 MT123 ABCV34_RS02650 RNA chaperone Hfq no data 77 73
  Burkholderia phytofirmans PsJN BPHYT_RS12555 RNA-binding protein Hfq no data 82 70
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00521 RNA-binding protein Hfq no data 82 70
  Paraburkholderia graminis OAS925 ABIE53_002737 host factor-I protein no data 82 70
  Paraburkholderia sabiae LMG 24235 QEN71_RS06000 RNA chaperone Hfq no data 82 70
  Acidovorax sp. GW101-3H11 Ac3H11_1799 RNA-binding protein Hfq no data 75 78
  Acinetobacter radioresistens SK82 MPMX26_01209 RNA-binding protein Hfq cofit 85 65
  Pseudomonas syringae pv. syringae B728a Psyr_0572 RNA-binding protein Hfq no data 74 79
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0572 RNA-binding protein Hfq no data 74 79
  Pseudomonas sp. RS175 PFR28_05121 RNA-binding protein Hfq no data 85 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1412 RNA-binding protein Hfq no data 85 67
  Pseudomonas fluorescens FW300-N2E3 AO353_13145 RNA-binding protein no data 85 67
  Pseudomonas fluorescens FW300-N2C3 AO356_08655 RNA-binding protein no data 85 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3614 RNA-binding protein Hfq no data 85 67
o Pseudomonas fluorescens GW456-L13 PfGW456L13_154 RNA-binding protein Hfq no data 73 80
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4858 RNA-binding protein Hfq no data 86 65
o Pseudomonas fluorescens SBW25 PFLU_RS02570 RNA chaperone Hfq no data 85 67
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02570 RNA chaperone Hfq no data 85 67
o Pseudomonas simiae WCS417 PS417_02490 RNA-binding protein Hfq no data 85 67
  Ralstonia sp. UNC404CL21Col ABZR87_RS10940 RNA chaperone Hfq no data 78 72
  Ralstonia solanacearum PSI07 RPSI07_RS18075 RNA-binding protein Hfq no data 78 72
  Cupriavidus basilensis FW507-4G11 RR42_RS13115 RNA chaperone Hfq no data 75 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15300 RNA-binding protein Hfq no data 75 75
  Ralstonia solanacearum GMI1000 RS_RS06110 RNA-binding protein Hfq no data 75 75
  Ralstonia solanacearum UW163 UW163_RS12765 RNA-binding protein Hfq no data 75 75
  Variovorax sp. OAS795 ABID97_RS14250 RNA chaperone Hfq no data 84 66
  Variovorax sp. SCN45 GFF1000 RNA-binding protein Hfq no data 84 66
  Herbaspirillum seropedicae SmR1 HSERO_RS14775 RNA-binding protein Hfq no data 83 65
  Phaeobacter inhibens DSM 17395 PGA1_c14850 protein hfq (RNA chaperone hfq) no data 56 66
  Caulobacter crescentus NA1000 CCNA_01819 RNA-binding protein, Hfq family no data 50 74
  Caulobacter crescentus NA1000 Δfur CCNA_01819 RNA-binding protein, Hfq family no data 50 74
  Dinoroseobacter shibae DFL-12 Dshi_1567 RNA chaperone Hfq (RefSeq) no data 54 69
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04830 RNA chaperone Hfq no data 53 72
  Bosea sp. OAE506 ABIE41_RS16770 RNA chaperone Hfq no data 54 65
  Magnetospirillum magneticum AMB-1 AMB_RS11975 RNA-binding protein Hfq no data 56 66
  Azospirillum sp. SherDot2 MPMX19_01116 RNA-binding protein Hfq no data 55 65
  Azospirillum brasilense Sp245 AZOBR_RS14465 RNA-binding protein Hfq no data 55 65
  Rhodopseudomonas palustris CGA009 TX73_013440 RNA chaperone Hfq no data 52 65
  Sinorhizobium meliloti 1021 SMc01048 RNA-binding protein Hfq no data 47 70
  Agrobacterium fabrum C58 Atu1450 putative RNA-binding protein Hfq no data 44 75
  Rhizobium sp. OAE497 ABIE40_RS09110 RNA chaperone Hfq no data 49 65
  Rhodospirillum rubrum S1H Rru_A1684 Host factor Hfq (NCBI) no data 54 65
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 54 69
  Paraburkholderia graminis OAS925 ABIE53_002427 host factor-I protein strong 45 85
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05122 host factor-I protein strong 45 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 44 75
  Paraburkholderia sabiae LMG 24235 QEN71_RS23015 RNA chaperone Hfq strong 46 78
  Burkholderia phytofirmans PsJN BPHYT_RS08235 nucleoprotein, Hfg, host factor I insig. 45 85
  Cupriavidus basilensis FW507-4G11 RR42_RS27945 RNA chaperone Hfq strong 54 54
  Marinobacter adhaerens HP15 HP15_2499 Hfq-like protein no data 71 34
  Cupriavidus basilensis FW507-4G11 RR42_RS23660 hypothetical protein insig. 33 64