Homologs of HMPREF1058_RS09680 from Phocaeicola vulgatus CL09T03C04

site-specific tyrosine recombinase XerD
SEED: Phage integrase
KEGG: integrase/recombinase XerD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD strong 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS07000 site-specific tyrosine recombinase XerD sig. 99 98
o Bacteroides thetaiotaomicron VPI-5482 BT2843 integrase (NCBI ptt file) strong 76 99
o Bacteroides stercoris CC31F HMPREF1181_RS01250 site-specific tyrosine recombinase XerD insig. 76 96
o Bacteroides ovatus ATCC 8483 BACOVA_02123 tyrosine recombinase XerD strong 77 95
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD strong 66 94
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00850 site-specific tyrosine recombinase XerD no data 54 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10220 site-specific tyrosine recombinase XerD insig. 55 92
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09520 site-specific tyrosine recombinase XerD sig. 52 91
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1809 tyrosine recombinase XerD insig. 51 92
o Cellulophaga baltica 18 M666_RS11310 site-specific tyrosine recombinase XerD sig. 54 94
o Pseudomonas fluorescens SBW25 PFLU_RS24560 site-specific tyrosine recombinase XerD sig. 42 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24560 site-specific tyrosine recombinase XerD strong 42 92
o Pseudomonas sp. DMC3 GFF1987 Tyrosine recombinase XerD insig. 43 90
o Pseudomonas sp. RS175 PFR28_00331 Tyrosine recombinase XerD strong 44 90
o Pseudomonas sp. SVBP6 COO64_RS04910 xerD site-specific tyrosine recombinase XerD sig. 44 90
o Pseudomonas syringae pv. syringae B728a Psyr_1286 tyrosine recombinase XerD subunit sig. 42 92
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1286 tyrosine recombinase XerD subunit sig. 42 92
o Pseudomonas fluorescens FW300-N2C3 AO356_06385 recombinase XerD strong 43 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3145 Tyrosine recombinase XerD no data 43 90
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1721 Tyrosine recombinase XerD strong 42 90
o Pseudomonas simiae WCS417 PS417_22895 tyrosine recombinase XerD strong 42 92
o Pseudomonas fluorescens FW300-N2E3 AO353_04365 recombinase XerD strong 42 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3011 Tyrosine recombinase XerD insig. 42 90
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04729 Tyrosine recombinase XerD cofit 41 92
o Pseudomonas sp. BP01 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD insig. 41 90
o Pseudomonas putida KT2440 PP_1468 Tyrosine recombinase XerD strong 41 90
o Pseudomonas segetis P6 MPMX49_01575 Tyrosine recombinase XerD cofit 42 92
o Shewanella amazonensis SB2B Sama_2739 integrase/recombinase XerD (RefSeq) strong 41 89
o Desulfovibrio vulgaris Hildenborough JW710 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) sig. 39 93
o Kangiella aquimarina DSM 16071 B158DRAFT_2265 tyrosine recombinase XerD strong 35 94
o Marinobacter adhaerens HP15 HP15_762 site-specific tyrosine recombinase XerD insig. 39 94
o Pseudomonas aeruginosa PA14 IKLFDK_19085 site-specific tyrosine recombinase XerD cofit 39 92
o Pseudomonas sp. S08-1 OH686_17750 tyrosine recombinase XerD insig. 39 92
o Pseudomonas stutzeri RCH2 Psest_3129 tyrosine recombinase XerD insig. 38 94
o Shewanella loihica PV-4 Shew_0770 tyrosine recombinase XerD (RefSeq) strong 37 94
o Dechlorosoma suillum PS Dsui_1217 tyrosine recombinase XerD cofit 39 90
o Alteromonas macleodii MIT1002 MIT1002_00786 Tyrosine recombinase XerD insig. 40 91
o Methylophilus sp. DMC18 GFF2342 Tyrosine recombinase XerD insig. 37 90
o Desulfovibrio vulgaris Miyazaki F DvMF_0359 tyrosine recombinase XerD (RefSeq) strong 40 92
o Shewanella oneidensis MR-1 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) strong 36 96
o Shewanella sp. ANA-3 Shewana3_3331 tyrosine recombinase XerD (RefSeq) strong 36 96
o Rahnella sp. WP5 EX31_RS13480 site-specific tyrosine recombinase XerD strong 37 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19225 site-specific tyrosine recombinase XerD strong 37 95
o Vibrio cholerae E7946 ATCC 55056 CSW01_12250 site-specific tyrosine recombinase XerD strong 35 96
o Lysobacter sp. OAE881 ABIE51_RS04495 site-specific tyrosine recombinase XerD strong 38 89
o Serratia liquefaciens MT49 IAI46_20730 site-specific tyrosine recombinase XerD insig. 36 94
o Erwinia amylovora T8 OLJFJH_08835 site-specific tyrosine recombinase XerD strong 36 94
o Herbaspirillum seropedicae SmR1 HSERO_RS04265 tyrosine recombinase XerD insig. 37 90
o Acinetobacter baumannii LAC-4 RR41_RS17765 site-specific tyrosine recombinase XerD no data 37 92
o Rhodanobacter sp. FW510-T8 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD insig. 37 95
o Acinetobacter radioresistens SK82 MPMX26_00169 Tyrosine recombinase XerD no data 36 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04126 integrase/recombinase XerD no data 39 90
o Dickeya dianthicola 67-19 HGI48_RS03440 site-specific tyrosine recombinase XerD insig. 36 94
o Dickeya dianthicola ME23 DZA65_RS03485 site-specific tyrosine recombinase XerD no data 36 94
o Paraburkholderia graminis OAS925 ABIE53_003361 integrase/recombinase XerD strong 39 90
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS05285 site-specific tyrosine recombinase XerD insig. 40 89
o Rhodanobacter denitrificans MT42 LRK55_RS04515 site-specific tyrosine recombinase XerD strong 37 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04735 site-specific tyrosine recombinase XerD insig. 37 95
o Dickeya dadantii 3937 DDA3937_RS03300 site-specific tyrosine recombinase XerD insig. 35 94
o Ralstonia solanacearum PSI07 RPSI07_RS12160 site-specific tyrosine recombinase XerD insig. 36 92
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.847.1 Site-specific tyrosine recombinase no data 37 90
o Bifidobacterium breve UCC2003 BBR_RS16755 site-specific tyrosine recombinase XerD strong 36 90
o Burkholderia phytofirmans PsJN BPHYT_RS15950 tyrosine recombinase XerD sig. 38 90
o Sinorhizobium meliloti 1021 SMc00691 site-specific tyrosine recombinase XerD sig. 35 97
o Pantoea sp. MT58 IAI47_03820 site-specific tyrosine recombinase XerD strong 36 90
  Methylophilus sp. DMC18 GFF1535 Tyrosine recombinase XerC insig. 36 94
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD cofit 36 90
o Escherichia coli ECOR38 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD strong 36 90
o Enterobacter sp. TBS_079 MPMX20_03753 Tyrosine recombinase XerD strong 35 94
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2991 Tyrosine recombinase XerD cofit 36 90
o Ralstonia solanacearum GMI1000 RS_RS12755 tyrosine recombinase XerD no data 35 92
o Pectobacterium carotovorum WPP14 HER17_RS17890 site-specific tyrosine recombinase XerD strong 34 94
o Klebsiella michiganensis M5al BWI76_RS23815 site-specific tyrosine recombinase XerD no data 36 90
o Klebsiella pneumoniae MKP103 KDGMDA_04300 site-specific tyrosine recombinase XerD sig. 35 94
o Escherichia coli ECRC102 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD no data 35 90
  Lysobacter sp. OAE881 ABIE51_RS03035 tyrosine recombinase XerC strong 36 95
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD no data 36 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00821 Tyrosine recombinase XerD sig. 35 90
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS05140 site-specific tyrosine recombinase XerD insig. 35 92
o Ralstonia solanacearum UW163 UW163_RS08485 site-specific tyrosine recombinase XerD insig. 35 92
o Escherichia coli BL21 ECD_02726 site-specific tyrosine recombinase strong 35 90
o Escherichia fergusonii Becca EFB2_01007 Tyrosine recombinase XerD strong 35 90
o Escherichia coli ECOR27 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD insig. 35 90
o Escherichia coli ECRC100 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD no data 35 90
o Escherichia coli ECRC101 MCAODC_10090 xerD site-specific tyrosine recombinase XerD no data 35 90
o Escherichia coli ECRC62 BNILDI_10025 xerD site-specific tyrosine recombinase XerD insig. 35 90
o Escherichia coli ECRC98 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD no data 35 90
o Escherichia coli ECRC99 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD no data 35 90
o Escherichia coli Nissle 1917 ECOLIN_RS16125 site-specific tyrosine recombinase XerD strong 35 90
o Escherichia coli BW25113 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) strong 35 90
  Pseudomonas syringae pv. syringae B728a Psyr_0185 tyrosine recombinase XerC subunit sig. 37 93
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0185 tyrosine recombinase XerC subunit sig. 37 93
o Enterobacter asburiae PDN3 EX28DRAFT_2945 tyrosine recombinase XerD insig. 35 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS02755 site-specific tyrosine recombinase XerD no data 38 90
o Erwinia tracheiphila SCR3 LU632_RS05975 xerD site-specific tyrosine recombinase XerD no data 36 93
  Rhodanobacter denitrificans MT42 LRK55_RS08300 tyrosine recombinase XerC strong 37 96
  Dechlorosoma suillum PS Dsui_2597 tyrosine recombinase XerD cofit 36 90
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4441.1 Tyrosine recombinase XerD sig. 36 94
o Acidovorax sp. GW101-3H11 Ac3H11_302 Tyrosine recombinase XerD no data 36 90