| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas simiae WCS417 | PS417_03070 | | LuxR family transcriptional regulator | sig. | 100 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS03150 | | response regulator transcription factor | insig. | 94 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03150 | | response regulator transcription factor | sig. | 94 | 100 |
| o | Pseudomonas orientalis W4I3 | QF045_RS06105 | | response regulator transcription factor | cofit | 86 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_13785 | | LuxR family transcriptional regulator | insig. | 80 | 100 |
| o | Pseudomonas sp. DMC3 | GFF3335 | | Response regulator protein TmoT | cofit | 80 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1282 | | DNA-binding response regulator, LuxR family | insig. | 75 | 100 |
| o | Pseudomonas sp. SVBP6 | COO64_RS18480 | | response regulator transcription factor | insig. | 71 | 100 |
| o | Pseudomonas putida KT2440 | PP_0574 | | DNA-binding response regulator, LuxR family | strong | 65 | 100 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 65 | 96 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 65 | 96 |
| o | Pseudomonas sp. BP01 | JOY50_RS23205 | | response regulator transcription factor | insig. | 62 | 100 |
| o | Pseudomonas segetis P6 | ACVTMO_RS19995 | | response regulator transcription factor | insig. | 53 | 100 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS25025 | pprB;inference=COORDINATES | two-component response regulator PprB | sig. | 53 | 95 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_02630 | | two-component response regulator PprB | insig. | 53 | 95 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS57480 | pprB;inference=COORDINATES | two-component response regulator PprB | sig. | 53 | 95 |
| | Shewanella loihica PV-4 | Shew_0842 | | two component LuxR family transcriptional regulator (RefSeq) | sig. | 29 | 90 |
| | Dechlorosoma suillum PS | Dsui_2511 | | response regulator | insig. | 26 | 97 |
| | Shewanella amazonensis SB2B | Sama_0646 | | response regulator receiver protein (RefSeq) | sig. | 29 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS22765 | | response regulator | insig. | 34 | 47 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS02990 | | two-component system response regulator Rre1 | no data | 26 | 92 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1860 | ycf29 | two component transcriptional regulator, LuxR family | no data | 28 | 93 |
| | Shewanella oneidensis MR-1 | SO3982 | narP | DNA-binding nitrate/nitrite response regulator (NCBI ptt file) | sig. | 29 | 90 |
| | Pseudomonas sp. DMC3 | GFF1302 | | Regulator of RpoS | no data | 32 | 59 |
| | Shewanella amazonensis SB2B | Sama_2399 | | response regulator receiver protein (RefSeq) | insig. | 27 | 92 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4489 | | Nitrate/nitrite response regulator protein | no data | 29 | 91 |
| | Pseudomonas sp. BP01 | JOY50_RS25185 | rssB | two-component system response regulator RssB | no data | 32 | 54 |
| | Pseudomonas orientalis W4I3 | QF045_RS04425 | | sigma-54 dependent transcriptional regulator | cofit | 31 | 45 |
| | Shewanella sp. ANA-3 | Shewana3_0656 | | two component LuxR family transcriptional regulator (RefSeq) | insig. | 28 | 90 |
| | Azospirillum sp. SherDot2 | MPMX19_04701 | | Transcriptional regulatory protein FixJ | insig. | 26 | 90 |
| | Pseudomonas putida KT2440 | PP_2165 | | Response regulator | no data | 32 | 54 |
| | Azospirillum sp. SherDot2 | MPMX19_04115 | | Sensor histidine kinase RcsC | insig. | 38 | 44 |
| | Pseudomonas stutzeri RCH2 | Psest_3491 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | no data | 30 | 80 |
| | Pseudomonas sp. DMC3 | GFF84 | | Regulatory protein AtoC | no data | 37 | 47 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00486 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | cofit | 31 | 45 |
| | Pseudomonas simiae WCS417 | PS417_07720 | | chemotaxis protein CheY | no data | 31 | 59 |
| | Pseudomonas orientalis W4I3 | QF045_RS10365 | | SpoIIE family protein phosphatase | no data | 31 | 59 |
| | Pseudomonas stutzeri RCH2 | Psest_2710 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | no data | 31 | 62 |
| | Lysobacter sp. OAE881 | ABIE51_RS09725 | | response regulator | no data | 30 | 87 |
| | Pseudomonas sp. RS175 | PFR28_04111 | | Regulatory protein AtoC | no data | 35 | 47 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_14095 | | response regulator | no data | 35 | 47 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c13440 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | no data | 33 | 48 |
| | Pseudomonas putida KT2440 | PP_5324 | | Response regulator | insig. | 32 | 58 |
| | Shewanella loihica PV-4 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | strong | 31 | 56 |
| | Lysobacter sp. OAE881 | ABIE51_RS01400 | | HAMP domain-containing protein | cofit | 39 | 45 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03060 | | SpoIIE family protein phosphatase | no data | 32 | 61 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS32530 | rssB;go_process=phosphorelay | two-component system response regulator RssB | no data | 32 | 61 |
| | Pseudomonas sp. RS175 | PFR28_01140 | | Regulator of RpoS | no data | 30 | 59 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_14160 | | fused response regulator/phosphatase | no data | 32 | 61 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2260 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 30 | 59 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS34135 | | two-component system response regulator NarL | insig. | 28 | 90 |
| | Pseudomonas segetis P6 | ACVTMO_RS01055 | | sigma-54-dependent transcriptional regulator | insig. | 36 | 48 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4751 | | response regulator | insig. | 34 | 47 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4011 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 30 | 59 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_60 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 30 | 59 |
| | Pseudomonas stutzeri RCH2 | Psest_4267 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 29 | 47 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_00320 | | chemotaxis protein CheY | no data | 30 | 59 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1724 | | DNA-binding response regulator, LuxR family | no data | 27 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2477 | | response regulator | insig. | 37 | 47 |
| | Pseudomonas orientalis W4I3 | QF045_RS06155 | | response regulator | insig. | 34 | 44 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07795 | | SpoIIE family protein phosphatase | no data | 31 | 59 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07795 | | SpoIIE family protein phosphatase | no data | 31 | 59 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 31 | 45 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 31 | 45 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01676 | | Regulator of RpoS | no data | 30 | 59 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02185 | | chemotaxis protein CheY | no data | 30 | 59 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08635 | | response regulator | sig. | 37 | 50 |
| | Pseudomonas sp. BP01 | JOY50_RS08880 | | response regulator | insig. | 32 | 58 |
| | Pseudomonas sp. SVBP6 | COO64_RS09545 | rssB | two-component system response regulator RssB | no data | 31 | 54 |
| | Pseudomonas simiae WCS417 | PS417_01305 | | Fis family transcriptional regulator | sig. | 31 | 45 |
| | Pseudomonas sp. S08-1 | OH686_22730 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 29 | 54 |
| | Pseudomonas stutzeri RCH2 | Psest_3850 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 37 | 46 |
| | Azospirillum sp. SherDot2 | MPMX19_05080 | | Sensor histidine kinase RcsC | insig. | 32 | 49 |
| | Xanthobacter sp. DMC5 | GFF4526 | | Sporulation initiation phosphotransferase F | insig. | 36 | 44 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0888 | | response regulator (TIGR) | sig. | 36 | 40 |
| | Methylophilus sp. DMC18 | GFF2815 | | Regulatory protein AtoC | insig. | 33 | 44 |
| | Paraburkholderia graminis OAS925 | ABIE53_003721 | | two-component system phosphate regulon response regulator OmpR | insig. | 38 | 42 |
| | Pseudomonas simiae WCS417 | PS417_03120 | | histidine kinase | insig. | 34 | 44 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02130 | | hybrid sensor histidine kinase/response regulator | strong | 29 | 64 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05631 | | two component transcriptional regulator, winged helix family | no data | 37 | 42 |
| | Pseudomonas sp. DMC3 | GFF2890 | | Sensor histidine kinase RcsC | cofit | 36 | 45 |
| | Sinorhizobium meliloti 1021 | SMa0940 | | Response regulator | insig. | 27 | 85 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4856 | | Signal transduction histidine kinase | insig. | 36 | 45 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS14470 | | phosphate regulon transcriptional regulator PhoB | insig. | 38 | 42 |
| | Pseudomonas sp. RS175 | PFR28_01719 | | Sensor histidine kinase RcsC | strong | 36 | 45 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03200 | | response regulator | insig. | 34 | 44 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03200 | | response regulator | insig. | 34 | 44 |
| | Marinobacter adhaerens HP15 | HP15_725 | | two component, sigma54 specific, transcriptional regulator, Fis family | strong | 33 | 51 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0258 | | sensory box histidine kinase/response regulator (TIGR) | strong | 33 | 48 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2205 | | sensor histidine kinase | insig. | 31 | 63 |
| | Pseudomonas stutzeri RCH2 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | strong | 28 | 72 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3048 | | Signal transduction histidine kinase | insig. | 37 | 45 |
| | Serratia liquefaciens MT49 | IAI46_04750 | | response regulator transcription factor | insig. | 34 | 40 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_07565 | | response regulator | no data | 35 | 46 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS12715 | | response regulator | insig. | 34 | 46 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26635 | | two-component system response regulator | insig. | 34 | 46 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS49415 | | response regulator | insig. | 34 | 46 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13490 | narL;go_function=DNA | two-component system response regulator NarL | insig. | 26 | 91 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19985 | | two-component system response regulator NarL | no data | 26 | 91 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48785 | narL;go_function=DNA | two-component system response regulator NarL | insig. | 26 | 91 |