Homologs of PS417_23980 from Pseudomonas simiae WCS417

ribosome maturation protein RimP
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Pseudomonas orientalis W4I3 QF045_RS26235 ribosome maturation factor RimP no data 100 100
  Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 99 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 99 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04947 Ribosome maturation factor RimP no data 99 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 98 100
o Pseudomonas sp. DMC3 GFF4986 Ribosome maturation factor RimP no data 98 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 97 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 96 100
o Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 95 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 94 100
o Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 94 100
o Pseudomonas segetis P6 ACVTMO_RS05945 rimP ribosome maturation factor RimP no data 82 100
o Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 91 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 91 100
o Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 82 100
o Pseudomonas aeruginosa MRSN321 DY961_RS09475 rimP;go_process=ribosomal ribosome maturation factor RimP no data 81 100
o Pseudomonas aeruginosa PA14 IKLFDK_29870 ribosome maturation factor RimP no data 81 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS52560 rimP;go_process=ribosomal ribosome maturation factor RimP no data 81 100
o Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 80 100
o Pseudomonas sp. BP01 JOY50_RS26825 rimP ribosome maturation factor RimP no data 84 100
o Pseudomonas sp. SVBP6 COO64_RS15180 rimP ribosome maturation factor RimP no data 82 100
o Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 82 100
o Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 65 100
o Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 56 99
o Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 52 99
o Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 51 99
o Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 50 99
o Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 52 99
o Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 52 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 50 95
o Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 50 99
o Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 50 99
o Erwinia amylovora T8 OLJFJH_07230 ribosome maturation factor RimP no data 48 99
o Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 49 99
o Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 49 99
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 49 99
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 49 99
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 49 99
  Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 49 99
o Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 49 99
o Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 48 99
o Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 48 99
o Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 50 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 53 93
o Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC100 OKFHMN_18100 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 48 99
o Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 48 99
o Klebsiella pneumoniae MRSN742743 KFA93_RS13165 rimP;go_process=ribosomal ribosome maturation factor RimP no data 48 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13925 rimP ribosome maturation factor RimP no data 50 99
o Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 48 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09130 ribosome maturation factor RimP strong 48 99
o Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 48 99
o Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 48 99
o Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 46 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 52 93
o Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 46 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 48 99
o Klebsiella pneumoniae MKP103 KDGMDA_05910 ribosome maturation factor RimP no data 50 93
o Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 44 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 46 90
o Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP insig. 45 90
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09060 ribosome maturation factor RimP no data 44 90
o Acinetobacter baumannii LAC-4 RR41_RS17310 ribosome maturation factor RimP no data 42 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 45 99
o Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 41 97
o Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 43 90
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 43 90
  Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 40 93
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 39 97
  Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 45 81
o Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 42 96
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 41 91
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 38 96
  Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 44 80
  Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 43 83
  Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 40 86
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 38 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 37 96
o Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 36 96
  Sphingobium sp. HT1-2 GFF2359 Bacterial ribosome SSU maturation protein RimP no data 40 84
o Methylophilus sp. DMC18 GFF2850 Ribosome maturation factor RimP no data 38 97
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 38 95
  Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 38 95
  Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 37 95
  Xanthobacter sp. DMC5 GFF2298 Ribosome maturation factor RimP no data 36 82
  Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 41 82
  Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 41 82
  Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 38 95
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 34 93
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 39 81
  Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 36 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 37 95
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13990 ribosome maturation factor RimP no data 32 97
  Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 34 94