Homologs of GFF4454 from Variovorax sp. SCN45

Exoribonuclease II (EC 3.1.13.1)
SEED: Exoribonuclease II (EC 3.1.13.1)
KEGG: exoribonuclease II

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF4454 Exoribonuclease II (EC 3.1.13.1) strong 100 100
o Acidovorax sp. GW101-3H11 Ac3H11_4042 Exoribonuclease II (EC 3.1.13.1) no data 74 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF577 Exoribonuclease II (EC 3.1.13.1) no data 70 94
o Herbaspirillum seropedicae SmR1 HSERO_RS01980 ribonuclease II no data 48 94
o Cupriavidus basilensis FW507-4G11 RR42_RS17655 ribonuclease II no data 46 96
o Ralstonia solanacearum PSI07 RPSI07_RS11290 RNB domain-containing ribonuclease no data 47 94
o Ralstonia sp. UNC404CL21Col ABZR87_RS01615 RNB domain-containing ribonuclease sig. 46 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS27135 RNB domain-containing ribonuclease no data 46 94
o Paraburkholderia graminis OAS925 ABIE53_003561 exoribonuclease-2 insig. 46 94
o Ralstonia solanacearum GMI1000 RS_RS13900 RNB domain-containing ribonuclease no data 46 94
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS05955 RNB domain-containing ribonuclease no data 47 94
o Ralstonia solanacearum UW163 UW163_RS07670 RNB domain-containing ribonuclease no data 47 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06290 exoribonuclease-2 no data 45 96
o Burkholderia phytofirmans PsJN BPHYT_RS16980 ribonuclease II no data 45 94
o Dechlorosoma suillum PS Dsui_0446 exoribonuclease R no data 45 96
o Castellaniella sp019104865 MT123 ABCV34_RS10695 RNB domain-containing ribonuclease no data 44 94
o Methylophilus sp. DMC18 GFF620 Exoribonuclease 2 cofit 42 94
  Desulfovibrio vulgaris Miyazaki F DvMF_1943 ribonuclease II (RefSeq) no data 28 50
  Synechocystis sp000284455 PCC 6803 SGL_RS05100 ribonuclease R no data 26 75
  Synechococcus elongatus PCC 7942 Synpcc7942_1124 rnb Exoribonuclease II strong 28 59
  Desulfovibrio vulgaris Hildenborough JW710 DVU3207 RNB-like family protein (TIGR) strong 27 56
  Vibrio cholerae E7946 ATCC 55056 CSW01_18190 exoribonuclease 2 insig. 27 41
  Dickeya dadantii 3937 DDA3937_RS12490 exoribonuclease II strong 29 43
  Serratia liquefaciens MT49 IAI46_13870 exoribonuclease II cofit 26 42
  Dickeya dianthicola 67-19 HGI48_RS12545 exoribonuclease II cofit 28 43
  Dickeya dianthicola ME23 DZA65_RS12995 exoribonuclease II sig. 28 43
  Escherichia fergusonii Becca EFB2_02638 Exoribonuclease 2 sig. 25 49
  Escherichia coli Nissle 1917 ECOLIN_RS07765 exoribonuclease II no data 25 49
  Rahnella sp. WP5 EX31_RS07155 exoribonuclease II insig. 27 41
  Pantoea sp. MT58 IAI47_09320 exoribonuclease II sig. 27 44
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02395 Exoribonuclease 2 sig. 25 49
  Escherichia coli ECOR27 NOLOHH_20185 rnb exoribonuclease II insig. 25 49
  Escherichia coli ECOR38 HEPCGN_25680 rnb exoribonuclease II strong 25 49
  Escherichia coli BW25113 b1286 rnb exoribonuclease II (NCBI) strong 25 49
  Escherichia coli ECRC62 BNILDI_18335 rnb exoribonuclease II cofit 25 49
  Pectobacterium carotovorum WPP14 HER17_RS09430 exoribonuclease II strong 27 44
  Enterobacter sp. TBS_079 MPMX20_02487 Exoribonuclease 2 strong 25 44
  Escherichia coli ECRC100 OKFHMN_02520 rnb exoribonuclease II cofit 25 49
  Escherichia coli ECRC101 MCAODC_15750 rnb exoribonuclease II strong 25 49
  Escherichia coli ECRC102 NIAGMN_26690 rnb exoribonuclease II sig. 25 49
  Escherichia coli ECRC98 JDDGAC_05065 rnb exoribonuclease II sig. 25 49
  Escherichia coli ECRC99 KEDOAH_26245 rnb exoribonuclease II no data 25 49
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS06855 exoribonuclease II cofit 27 44
  Escherichia coli BL21 ECD_01263 ribonuclease II cofit 24 48
  Klebsiella pneumoniae MKP103 KDGMDA_19680 exoribonuclease II strong 26 44
  Enterobacter asburiae PDN3 EX28DRAFT_0961 exoribonuclease II cofit 25 44
  Klebsiella michiganensis M5al BWI76_RS11990 exoribonuclease II sig. 25 41
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2698 Exoribonuclease II (EC 3.1.13.1) strong 24 41
  Erwinia amylovora T8 OLJFJH_13600 exoribonuclease II cofit 26 43
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23355 exoribonuclease II no data 26 45
  Erwinia tracheiphila SCR3 LU632_RS12255 exoribonuclease II no data 26 45
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 25 40
  Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 21 43
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 24 40
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 24 40
  Synechococcus elongatus PCC 7942 Synpcc7942_1546 putative ribonuclease II strong 27 42
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 39 12
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 26 33
  Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 25 43
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 34 14
  Synechocystis sp000284455 PCC 6803 SGL_RS05500 ribonuclease R strong 26 31
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 23 45
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 39 11
  Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 33 14
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 40 11
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 32 14
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 26 34
  Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 37 11
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 23 40
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 33 13
  Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 25 41
  Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 25 41
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 25 34
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 36 11
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 24 34
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 24 34
  Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 24 40
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 24 41
  Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 24 41
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 23 47
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 25 41
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 24 34
  Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 25 40
  Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 25 42
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 26 40
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 24 41
  Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 24 41
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 25 42
  Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 25 40
  Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 24 41
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 23 42
  Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 23 42
  Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 23 40
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 24 40
  Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 23 42
  Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 26 36
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 25 40
  Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 34 13
  Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 26 27
  Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 25 45