Homologs of Psest_4160 from Pseudomonas stutzeri RCH2

RNA polymerase sigma factor, FliA/WhiG family
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

124 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Pseudomonas stutzeri RCH2	Psest_4160		RNA polymerase sigma factor, FliA/WhiG family	insig.	100	100
o	Erwinia tracheiphila SCR3	LU632_RS20475		FliA/WhiG family RNA polymerase sigma factor	no data	49	88
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_14635		RNA polymerase sigma factor FliA	no data	49	88
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4065		RNA polymerase sigma factor for flagellar operon	insig.	47	93
	Pseudomonas aeruginosa MRSN321	DY961_RS05635	fliA;inference=COORDINATES	RNA polymerase sigma factor FliA	strong	38	96
	Pseudomonas aeruginosa PUPa3	DQ20_RS47155	fliA;inference=COORDINATES	RNA polymerase sigma factor FliA	strong	38	96
	Pseudomonas aeruginosa PA14	IKLFDK_06920		flagellar biosynthesis sigma factor FliA	strong	40	88
	Herbaspirillum seropedicae SmR1	HSERO_RS10160		flagellar biosynthesis sigma factor	strong	37	88
	Marinobacter adhaerens HP15	HP15_2302		flagellar biosynthesis sigma factor FliA	strong	40	82
	Ralstonia solanacearum GMI1000	RS_RS23830		RNA polymerase sigma factor FliA	insig.	38	87
	Erwinia tracheiphila HP pepo 2.2	IJEDHG_21960	fliA	RNA polymerase sigma factor FliA	cofit	39	86
	Pseudomonas sp. S08-1	OH686_02730		RNA polymerase sigma factor for flagellar operon	cofit	39	86
	Pseudomonas fluorescens FW300-N2C3	AO356_03730		flagellar biosynthesis sigma factor	strong	40	88
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2573		RNA polymerase sigma factor for flagellar operon	strong	40	88
	Pseudomonas segetis P6	ACVTMO_RS15490	fliA	RNA polymerase sigma factor FliA	strong	41	82
	Pseudomonas orientalis W4I3	QF045_RS21835		RNA polymerase sigma factor FliA	insig.	41	82
	Pseudomonas sp. DMC3	GFF2472		RNA polymerase sigma factor FliA	cofit	40	86
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3626		RNA polymerase sigma factor for flagellar operon	insig.	40	86
	Pseudomonas fluorescens FW300-N2E3	AO353_18785		flagellar biosynthesis sigma factor	strong	40	86
	Escherichia fergusonii Becca	EFB2_02023		RNA polymerase sigma factor FliA	insig.	39	83
	Pseudomonas fluorescens SBW25	PFLU_RS21660		RNA polymerase sigma factor FliA	cofit	41	82
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS21660		RNA polymerase sigma factor FliA	strong	41	82
	Pseudomonas sp. RS175	PFR28_00852		RNA polymerase sigma factor FliA	strong	41	86
	Pseudomonas protegens RBAN4	FABNJH_08660	fliA	RNA polymerase sigma factor FliA	sig.	40	84
	Pseudomonas simiae WCS417	PS417_19695		flagellar biosynthesis sigma factor	strong	40	84
	Pseudomonas fluorescens GW456-L13	PfGW456L13_4331		RNA polymerase sigma factor for flagellar operon	insig.	40	86
	Ralstonia sp. UNC404CL21Col	ABZR87_RS18040		RNA polymerase sigma factor FliA	strong	37	88
	Pseudomonas sp. SVBP6	COO64_RS25625	fliA	RNA polymerase sigma factor FliA	cofit	41	86
	Erwinia tracheiphila SCR3	LU632_RS13785		RNA polymerase sigma factor FliA	insig.	39	86
	Pseudomonas stutzeri RCH2	Psest_1740		RNA polymerase sigma factor, FliA/WhiG family	strong	40	88
	Escherichia coli Nissle 1917	ECOLIN_RS10975		RNA polymerase sigma factor FliA	insig.	39	84
	Escherichia coli BW25113	b1922	fliA	flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS)	sig.	39	84
	Escherichia coli ECOR27	NOLOHH_16400	fliA	RNA polymerase sigma factor FliA	strong	39	84
	Escherichia coli ECOR38	HEPCGN_04135	fliA	RNA polymerase sigma factor FliA	insig.	39	84
	Escherichia coli ECRC100	OKFHMN_25780	fliA	RNA polymerase sigma factor FliA	cofit	39	84
	Escherichia coli ECRC101	MCAODC_19610	fliA	RNA polymerase sigma factor FliA	insig.	39	84
	Escherichia coli ECRC102	NIAGMN_02270	fliA	RNA polymerase sigma factor FliA	insig.	39	84
	Escherichia coli ECRC62	BNILDI_15190	fliA	RNA polymerase sigma factor FliA	cofit	39	84
	Escherichia coli ECRC98	JDDGAC_00370	fliA	RNA polymerase sigma factor FliA	insig.	39	84
	Escherichia coli ECRC99	KEDOAH_02310	fliA	RNA polymerase sigma factor FliA	no data	39	84
	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_01807		RNA polymerase sigma factor FliA	insig.	39	84
	Paraburkholderia sabiae LMG 24235	QEN71_RS28940		RNA polymerase sigma factor FliA	strong	37	84
	Acidovorax sp. GW101-3H11	Ac3H11_1381		RNA polymerase sigma factor for flagellar operon	sig.	36	84
	Pseudomonas sp. BP01	JOY50_RS00585	fliA	RNA polymerase sigma factor FliA	cofit	39	88
	Pseudomonas lactucae CFBP13502	GEMAOFIL_04138		RNA polymerase sigma factor FliA	cofit	41	82
	Pseudomonas putida KT2440	PP_4341		RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons	strong	39	88
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_05756		RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG	strong	36	84
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS20265		RNA polymerase sigma factor FliA	insig.	38	83
	Ralstonia solanacearum PSI07	RPSI07_RS06165		RNA polymerase sigma factor FliA	insig.	36	87
	Pseudomonas syringae pv. syringae B728a	Psyr_3437		RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG	strong	40	84
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_3437		RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG	cofit	40	84
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS17485		RNA polymerase sigma factor FliA	insig.	36	87
	Ralstonia solanacearum UW163	UW163_RS21665		RNA polymerase sigma factor FliA	insig.	36	87
	Rhodanobacter sp. FW510-T8	OKGIIK_02830	fliA	RNA polymerase sigma factor FliA	cofit	38	83
	Paraburkholderia graminis OAS925	ABIE53_000108		RNA polymerase sigma factor for flagellar operon FliA	strong	36	84
	Pantoea sp. MT58	IAI47_08160		RNA polymerase sigma factor FliA	cofit	38	84
	Pantoea agglomerans CFBP13505 P0401	PagCFBP13516_RS08345		RNA polymerase sigma factor FliA	cofit	38	84
	Rahnella sp. WP5	EX31_RS09450		RNA polymerase sigma factor FliA	cofit	39	84
	Shewanella amazonensis SB2B	Sama_2280	fliA	flagellar biosynthesis sigma factor (RefSeq)	strong	38	83
	Erwinia amylovora T8	OLJFJH_12555		RNA polymerase sigma factor FliA	sig.	38	84
	Burkholderia phytofirmans PsJN	BPHYT_RS18925		RNA polymerase sigma70	strong	36	84
	Dickeya dianthicola 67-19	HGI48_RS13350		RNA polymerase sigma factor FliA	cofit	37	83
	Dickeya dianthicola ME23	DZA65_RS13835		RNA polymerase sigma factor FliA	strong	37	83
	Dechlorosoma suillum PS	Dsui_1726		RNA polymerase sigma factor, FliA/WhiG family	cofit	35	86
	Dickeya dadantii 3937	DDA3937_RS13300		RNA polymerase sigma factor FliA	strong	37	83
	Serratia liquefaciens MT49	IAI46_15785		RNA polymerase sigma factor FliA	insig.	39	85
	Rhodanobacter denitrificans MT42	LRK55_RS13320		RNA polymerase sigma factor FliA	cofit	37	83
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS13580		RNA polymerase sigma factor FliA	strong	37	83
	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF1690		RNA polymerase sigma factor for flagellar operon	strong	38	83
	Enterobacter asburiae PDN3	EX28DRAFT_0625		RNA polymerase sigma factor, FliA/WhiG family	cofit	38	84
	Enterobacter sp. TBS_079	MPMX20_02847		RNA polymerase sigma factor FliA	strong	38	84
	Rhodanobacter sp000427505 FW510-R12	LRK53_RS14995		RNA polymerase sigma factor FliA	insig.	37	83
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF1428		RNA polymerase sigma factor for flagellar operon	insig.	33	84
	Pectobacterium carotovorum WPP14	HER17_RS08355		RNA polymerase sigma factor FliA	cofit	38	84
	Vibrio cholerae E7946 ATCC 55056	CSW01_10335		RNA polymerase sigma factor FliA	cofit	34	95
	Methylophilus sp. DMC18	GFF1338		RNA polymerase sigma factor FliA	cofit	34	82
	Shewanella sp. ANA-3	Shewana3_1359	fliA	flagellar biosynthesis sigma factor (RefSeq)	strong	39	83
	Shewanella loihica PV-4	Shew_1383	fliA	flagellar biosynthesis sigma factor (RefSeq)	strong	37	83
	Shewanella oneidensis MR-1	SO3210	fliA	RNA polymerase sigma-27 factor (NCBI ptt file)	strong	38	83
	Castellaniella sp019104865 MT123	ABCV34_RS05605		RNA polymerase sigma factor FliA	sig.	35	91
	Variovorax sp. SCN45	GFF5774		RNA polymerase sigma factor for flagellar operon	insig.	36	84
	Cupriavidus basilensis FW507-4G11	RR42_RS35750		DNA-directed RNA polymerase sigma-70 factor	insig.	36	83
	Alteromonas macleodii MIT1002	MIT1002_01103		Sigma-F factor	sig.	36	83
	Lysobacter sp. OAE881	ABIE51_RS16865		RNA polymerase sigma factor FliA	strong	35	81
	Desulfovibrio vulgaris Miyazaki F	DvMF_2011		RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq)	strong	34	88
	Desulfovibrio vulgaris Hildenborough JW710	DVU3229	fliA	RNA polymerase sigma factor for flagellar operon FliA (TIGR)	strong	33	89
	Sphingobium sp. HT1-2	GFF3722		RNA polymerase sigma factor for flagellar operon	cofit	33	84
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.2832.1		RNA polymerase sigma factor for flagellar operon	cofit	35	84
	Erwinia amylovora T8	OLJFJH_10105		RNA polymerase sigma factor FliA	insig.	31	92
	Sphingomonas koreensis DSMZ 15582	Ga0059261_2081		RNA polymerase sigma factor, FliA/WhiG family	cofit	31	82
	Synechococcus elongatus PCC 7942	Synpcc7942_1784	sigF2	RNA polymerase sigma factor SigF	strong	29	85
	Synechococcus elongatus PCC 7942	Synpcc7942_1510	sigF1	RNA polymerase sigma factor SigF	strong	29	73
	Sphingomonas koreensis DSMZ 15582	Ga0059261_1726		RNA polymerase sigma factor, sigma-70 family	insig.	27	84
	Synechocystis sp000284455 PCC 6803	SGL_RS17440		RNA polymerase sigma factor SigF	strong	27	86
	Escherichia coli Nissle 1917	ECOLIN_RS10960		sigma-70 family RNA polymerase sigma factor	no data	56	22
	Mycobacterium tuberculosis H37Rv	Rv3286c		Alternative RNA polymerase sigma factor SigF	insig.	24	85
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_04885		RNA polymerase subunit sigma	no data	29	76
	Synechocystis sp000284455 PCC 6803	SGL_RS12540		RNA polymerase sigma factor, RpoD/SigA family	strong	28	75
	Pseudomonas protegens RBAN4	FABNJH_06235	rpoS	RNA polymerase sigma factor RpoS	insig.	27	87
	Pseudomonas syringae pv. syringae B728a	Psyr_1374		RNA polymerase, sigma 38 subunit, RpoS	sig.	28	91
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1374		RNA polymerase, sigma 38 subunit, RpoS	cofit	28	91
	Pseudomonas sp. RS175	PFR28_00427		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas segetis P6	ACVTMO_RS16960	rpoS	RNA polymerase sigma factor RpoS	strong	26	91
	Pseudomonas aeruginosa MRSN321	DY961_RS14865	rpoS;go_function=DNA	RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas aeruginosa PA14	IKLFDK_18495		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas aeruginosa PUPa3	DQ20_RS42260	rpoS;go_function=DNA	RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas sp. S08-1	OH686_18185		RNA polymerase sigma factor RpoS	cofit	27	87
	Pseudomonas fluorescens SBW25	PFLU_RS06430		RNA polymerase sigma factor RpoS	cofit	27	87
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS06430		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas simiae WCS417	PS417_06365		RNA polymerase sigma factor	strong	27	87
	Pseudomonas fluorescens GW456-L13	PfGW456L13_4674		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3115		RNA polymerase sigma factor RpoS	strong	27	91
	Pseudomonas orientalis W4I3	QF045_RS09210		RNA polymerase sigma factor RpoS	insig.	27	87
	Pseudomonas fluorescens FW300-N2E3	AO353_16615		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas fluorescens FW300-N2C3	AO356_05885		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3037		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas lactucae CFBP13502	GEMAOFIL_01443		RNA polymerase sigma factor RpoS	cofit	27	91
	Pseudomonas sp. DMC3	GFF2084		RNA polymerase sigma factor RpoS	strong	27	87
	Pseudomonas sp. SVBP6	COO64_RS19795	rpoS	RNA polymerase sigma factor RpoS	insig.	27	87
	Pseudomonas stutzeri RCH2	Psest_2806		RNA polymerase sigma factor RpoS	strong	28	86
	Pseudomonas sp. BP01	JOY50_RS23755	rpoS	RNA polymerase sigma factor RpoS	insig.	27	87
	Pseudomonas putida KT2440	PP_1623		RNA polymerase, sigma S (sigma 38) factor	strong	27	87
	Fusobacterium nucleatum SB010	HUW76_09330		sigma-70 family RNA polymerase sigma factor	strong	26	39
	Phocaeicola dorei CL03T12C01	ABI39_RS21180		sigma-70 family RNA polymerase sigma factor	insig.	39	24