Homologs of Echvi_1339 from Echinicola vietnamensis KMM 6221, DSM 17526

16S rRNA processing protein RimM
KEGG: 16S rRNA processing protein RimM

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1339 16S rRNA processing protein RimM no data 100 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20585 16S rRNA processing protein RimM no data 47 99
o Cellulophaga baltica 18 M666_RS07005 ribosome maturation factor RimM no data 39 99
o Bacteroides stercoris CC31F HMPREF1181_RS07890 16S rRNA processing protein RimM no data 28 98
o Desulfovibrio vulgaris Miyazaki F DvMF_2885 16S rRNA processing protein RimM (RefSeq) insig. 31 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00535 16S rRNA processing protein RimM no data 28 97
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20955 16S rRNA processing protein RimM no data 32 99
o Phocaeicola dorei CL03T12C01 ABI39_RS08155 16S rRNA processing protein RimM no data 28 97
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20125 ribosome maturation factor RimM no data 31 99
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS15255 ribosome maturation factor RimM strong 26 98
o Phaeobacter inhibens DSM 17395 PGA1_c00540 putative 16S rRNA-processing protein RimM no data 31 97
o Bacteroides thetaiotaomicron VPI-5482 BT2004 RimM protein, required for 16S rRNA processing (NCBI ptt file) no data 27 98
o Desulfovibrio vulgaris Hildenborough JW710 DVU0837 rimM 16S rRNA processing protein RimM (TIGR) no data 33 100
o Dinoroseobacter shibae DFL-12 Dshi_0344 16S rRNA processing protein RimM (RefSeq) no data 28 91
o Bacteroides ovatus ATCC 8483 BACOVA_01433 16S rRNA processing protein RimM no data 24 91
o Acidovorax sp. GW101-3H11 Ac3H11_1685 16S rRNA processing protein RimM no data 26 89
o Synechococcus elongatus PCC 7942 Synpcc7942_2259 rimM 16S rRNA-processing protein strong 26 94
o Pseudomonas fluorescens FW300-N2C3 AO356_06400 16S rRNA processing protein RimM no data 28 89
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3148 16S rRNA processing protein RimM no data 28 89
o Variovorax sp. OAS795 ABID97_RS08745 ribosome maturation factor RimM no data 27 88
o Pseudomonas sp. SVBP6 COO64_RS04885 rimM ribosome maturation factor RimM no data 27 89
o Pseudomonas stutzeri RCH2 Psest_3132 16S rRNA processing protein RimM no data 28 86
o Pseudomonas aeruginosa PA14 IKLFDK_19115 ribosome maturation factor RimM no data 26 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS04215 ribosome maturation factor RimM no data 29 91
o Pseudomonas aeruginosa MRSN321 DY961_RS14250 rimM;go_function=RNA ribosome maturation factor RimM no data 26 90
o Pseudomonas aeruginosa PUPa3 DQ20_RS42875 rimM;go_function=RNA ribosome maturation factor RimM no data 26 90
o Variovorax sp. SCN45 GFF3950 16S rRNA processing protein RimM no data 26 86
  Rhodospirillum rubrum S1H Rru_A1186 16S rRNA processing protein RimM (NCBI) no data 32 68
o Mycobacterium tuberculosis H37Rv Rv2907c Probable 16S rRNA processing protein RimM no data 30 93
o Pseudomonas segetis P6 ACVTMO_RS07770 rimM ribosome maturation factor RimM no data 26 85
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1717 16S rRNA processing protein RimM no data 27 88
o Azospirillum sp. SherDot2 MPMX19_00324 Ribosome maturation factor RimM no data 29 94
o Methylophilus sp. DMC18 GFF2338 Ribosome maturation factor RimM no data 26 94
o Bosea sp. OAE506 ABIE41_RS11745 ribosome maturation factor RimM no data 27 95
o Synechocystis sp000284455 PCC 6803 SGL_RS09820 ribosome maturation factor RimM strong 28 95
o Pseudomonas sp. RS175 PFR28_00328 Ribosome maturation factor RimM no data 27 89
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04732 Ribosome maturation factor RimM no data 27 88
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_872 16S rRNA processing protein RimM no data 27 88
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4171 16S rRNA processing protein RimM no data 27 87
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS13910 ribosome maturation factor RimM no data 25 91
  Ralstonia solanacearum UW163 UW163_RS15900 ribosome maturation factor RimM no data 25 91
o Pseudomonas orientalis W4I3 QF045_RS25105 ribosome maturation factor RimM no data 27 88
o Dechlorosoma suillum PS Dsui_3514 16S rRNA processing protein RimM no data 26 87
  Rhizobium sp. OAE497 ABIE40_RS18350 ribosome maturation factor RimM no data 34 53
o Xanthobacter sp. DMC5 GFF1912 Ribosome maturation factor RimM no data 24 88
o Pseudomonas sp. S08-1 OH686_17730 16S rRNA processing protein RimM no data 27 87
o Rahnella sp. WP5 EX31_RS07720 ribosome maturation factor RimM no data 26 87
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5739 16S rRNA processing protein RimM no data 25 90
o Pseudomonas simiae WCS417 PS417_22915 16S rRNA processing protein RimM no data 27 88
o Klebsiella michiganensis M5al BWI76_RS21520 ribosome maturation factor RimM no data 26 87
o Pseudomonas fluorescens FW300-N2E3 AO353_04380 16S rRNA processing protein RimM no data 25 90
  Ralstonia solanacearum PSI07 RPSI07_RS19560 ribosome maturation factor RimM no data 25 91
o Pseudomonas syringae pv. syringae B728a Psyr_1283 16S rRNA processing protein RimM no data 25 91
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1283 16S rRNA processing protein RimM no data 25 91
  Kangiella aquimarina DSM 16071 B158DRAFT_2262 16S rRNA processing protein RimM no data 30 64
o Azospirillum brasilense Sp245 AZOBR_RS03520 16S rRNA-processing protein RimM no data 26 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04293 16S rRNA processing protein RimM no data 27 90
o Pseudomonas putida KT2440 PP_1463 Ribosome maturation factor RimM no data 26 88
o Enterobacter asburiae PDN3 EX28DRAFT_2711 16S rRNA processing protein RimM no data 24 87
  Sphingobium sp. HT1-2 GFF3806 16S rRNA processing protein RimM no data 29 88
o Pseudomonas fluorescens SBW25 PFLU_RS24575 ribosome maturation factor RimM no data 26 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24575 ribosome maturation factor RimM no data 26 88
o Enterobacter sp. TBS_079 MPMX20_03478 Ribosome maturation factor RimM no data 24 87
o Ralstonia sp. UNC404CL21Col ABZR87_RS09605 ribosome maturation factor RimM no data 24 91
o Escherichia coli BL21 ECD_02497 ribosome maturation factor no data 25 87
o Escherichia fergusonii Becca EFB2_01284 Ribosome maturation factor RimM no data 25 87
o Escherichia coli ECOR27 NOLOHH_12855 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECOR38 HEPCGN_20300 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC100 OKFHMN_21180 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC101 MCAODC_11710 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC102 NIAGMN_18950 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC62 BNILDI_11660 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC98 JDDGAC_24845 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli ECRC99 KEDOAH_07040 rimM ribosome maturation factor RimM no data 25 87
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01098 Ribosome maturation factor RimM no data 25 87
o Escherichia coli Nissle 1917 ECOLIN_RS14740 ribosome maturation factor RimM no data 25 87
o Escherichia coli BW25113 b2608 yfjA orf, hypothetical protein (VIMSS) no data 25 87
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4160 16S rRNA processing protein RimM no data 24 91
  Herbaspirillum seropedicae SmR1 HSERO_RS07580 ribosome maturation factor RimM no data 23 82
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_01525 rimM ribosome maturation factor RimM no data 23 85
o Erwinia tracheiphila SCR3 LU632_RS15660 rimM ribosome maturation factor RimM no data 23 85
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08820 ribosome maturation factor RimM no data 30 60
o Agrobacterium fabrum C58 Atu2700 16S rRNA processing protein no data 29 88
  Paraburkholderia graminis OAS925 ABIE53_003127 16S rRNA processing protein RimM no data 25 90
  Ralstonia solanacearum GMI1000 RS_RS04645 ribosome maturation factor RimM no data 24 91
o Vibrio cholerae E7946 ATCC 55056 CSW01_03000 ribosome maturation factor RimM no data 24 91
  Burkholderia phytofirmans PsJN BPHYT_RS14760 ribosome maturation factor RimM no data 26 89
o Pseudomonas sp. DMC3 GFF1983 Ribosome maturation factor RimM no data 25 88
o Magnetospirillum magneticum AMB-1 AMB_RS20545 ribosome maturation factor RimM no data 28 58
o Bifidobacterium breve UCC2003 BBR_RS12290 ribosome maturation factor RimM no data 30 65
o Klebsiella pneumoniae MKP103 KDGMDA_02215 ribosome maturation factor RimM no data 24 87
  Acinetobacter radioresistens SK82 MPMX26_02784 Ribosome maturation factor RimM no data 22 91
o Serratia liquefaciens MT49 IAI46_03925 ribosome maturation factor RimM no data 23 87
  Acinetobacter baumannii LAC-4 RR41_RS01715 ribosome maturation factor RimM no data 21 91
  Caulobacter crescentus NA1000 CCNA_03766 16S rRNA processing protein RimM no data 27 74
  Caulobacter crescentus NA1000 Δfur CCNA_03766 16S rRNA processing protein RimM cofit 27 74
  Dickeya dianthicola ME23 DZA65_RS17375 ribosome maturation factor RimM no data 23 89
  Pseudomonas sp. BP01 JOY50_RS11680 rimM ribosome maturation factor RimM no data 26 88
  Pantoea sp. MT58 IAI47_04380 ribosome maturation factor RimM no data 23 86
  Dickeya dadantii 3937 DDA3937_RS16170 ribosome maturation factor RimM no data 23 89