Homologs of CA265_RS03500 from Pedobacter sp. GW460-11-11-14-LB5

cytochrome C biogenesis protein
SEED: Cytochrome c heme lyase subunit CcmF
KEGG: cytochrome c-type biogenesis protein CcmF

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS03500 cytochrome C biogenesis protein no data 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07885 cytochrome c biogenesis protein CcsA no data 57 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18700 cytochrome C biogenesis protein no data 40 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0800 Cytochrome c biogenesis factor no data 40 99
o Shewanella loihica PV-4 Shew_0347 cytochrome c assembly protein (RefSeq) insig. 27 78
  Kangiella aquimarina DSM 16071 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF strong 28 68
  Shewanella amazonensis SB2B Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) strong 28 77
  Shewanella loihica PV-4 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) strong 28 71
  Shewanella sp. ANA-3 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) strong 27 77
  Shewanella oneidensis MR-1 SO0478 ccmF-2 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) insig. 26 78
  Shewanella oneidensis MR-1 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) strong 27 77
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16065 heme lyase CcmF/NrfE family subunit no data 26 71
  Rhodanobacter denitrificans MT42 LRK55_RS15815 heme lyase CcmF/NrfE family subunit no data 29 56
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF sig. 28 59
  Rhizobium sp. OAE497 ABIE40_RS05685 heme lyase CcmF/NrfE family subunit strong 27 70
  Vibrio cholerae E7946 ATCC 55056 CSW01_10265 c-type cytochrome biogenesis protein CcmF strong 29 58
  Escherichia fergusonii Becca EFB2_01660 Cytochrome c-type biogenesis protein CcmF insig. 29 59
  Escherichia coli Nissle 1917 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF no data 29 59
  Alteromonas macleodii MIT1002 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF no data 30 56
  Escherichia coli BL21 ECD_02123 heme lyase, CcmF subunit insig. 29 59
  Escherichia coli ECRC101 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF insig. 29 59
  Escherichia coli ECRC101 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF insig. 29 59
  Escherichia coli ECRC102 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF insig. 29 59
  Escherichia coli ECRC62 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF insig. 29 59
  Escherichia coli ECRC98 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF no data 29 59
  Escherichia coli ECRC99 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF no data 29 59
  Escherichia coli BW25113 b2196 ccmF heme lyase, CcmF subunit (NCBI) insig. 29 59
o Rhodanobacter sp. FW510-T8 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF no data 34 41
  Escherichia coli ECOR27 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF cofit 29 59
  Rahnella sp. WP5 EX31_RS19745 heme lyase CcmF/NrfE family subunit insig. 26 67
  Desulfovibrio vulgaris Miyazaki F DvMF_3132 cytochrome c assembly protein (RefSeq) no data 25 77
  Escherichia coli ECOR38 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF cofit 29 60
  Pantoea sp. MT58 IAI47_06090 heme lyase CcmF/NrfE family subunit cofit 27 64
  Pectobacterium carotovorum WPP14 HER17_RS09055 heme lyase CcmF/NrfE family subunit insig. 26 70
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF no data 27 65
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4877 Cytochrome c heme lyase subunit CcmF no data 28 62
o Bosea sp. OAE506 ABIE41_RS21455 heme lyase CcmF/NrfE family subunit no data 29 54
  Serratia liquefaciens MT49 IAI46_18085 heme lyase CcmF/NrfE family subunit insig. 27 59
  Shewanella sp. ANA-3 Shewana3_0488 cytochrome c-type biogenesis protein CcmF (RefSeq) insig. 26 78
  Desulfovibrio vulgaris Hildenborough JW710 DVU1050 ccmF cytochrome c-type biogenesis protein CcmF (TIGR) no data 31 46
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit no data 26 77
o Dechlorosoma suillum PS Dsui_1172 c-type cytochrome biogenesis protein CcmF no data 25 83
  Desulfovibrio vulgaris Miyazaki F DvMF_0826 cytochrome c assembly protein (RefSeq) insig. 28 63
  Magnetospirillum magneticum AMB-1 AMB_RS21250 heme lyase CcmF/NrfE family subunit no data 27 68
  Dinoroseobacter shibae DFL-12 Dshi_3411 cytochrome c-type biogenesis protein CcmF (RefSeq) sig. 29 58
  Agrobacterium fabrum C58 Atu0975 cytochrome c-type synthesis protein no data 26 64
  Rhodopseudomonas palustris CGA009 TX73_009900 heme lyase CcmF/NrfE family subunit no data 29 48
  Pseudomonas sp. RS175 PFR28_00870 Cytochrome c-type biogenesis protein CcmF no data 27 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF no data 28 56
  Pseudomonas fluorescens FW300-N2E3 AO353_18875 cytochrome C biogenesis protein CcmF no data 27 65
  Lysobacter sp. OAE881 ABIE51_RS08700 heme lyase CcmF/NrfE family subunit strong 27 67
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF insig. 29 56
  Pseudomonas fluorescens SBW25 PFLU_RS08670 heme lyase CcmF/NrfE family subunit cofit 28 65
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08670 heme lyase CcmF/NrfE family subunit strong 28 65
  Phaeobacter inhibens DSM 17395 PGA1_c17010 cytochrome c-type biogenesis protein CcmF no data 32 45
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2342.1 Cytochrome c heme lyase subunit CcmF no data 30 60
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF no data 28 56
  Pseudomonas simiae WCS417 PS417_08715 cytochrome C biogenesis protein CcmF no data 27 65
  Rhodospirillum rubrum S1H Rru_A0035 Cytochrome c-type biogenesis protein CcmF (NCBI) no data 27 57
  Pseudomonas putida KT2440 PP_4322 holocytochrome c synthetase no data 27 74
  Sinorhizobium meliloti 1021 SMc02363 cytochrome C-type biogenesis transmembrane protein sig. 32 41
  Pseudomonas fluorescens FW300-N2C3 AO356_03635 cytochrome C biogenesis protein CcmF no data 28 56
  Marinobacter adhaerens HP15 HP15_2281 cytochrome c assembly protein no data 26 69
  Pseudomonas syringae pv. syringae B728a Psyr_3388 Cytochrome c-type biogenesis protein CcmF no data 26 65
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3388 Cytochrome c-type biogenesis protein CcmF no data 26 65
  Azospirillum brasilense Sp245 AZOBR_RS00740 heme lyase subunit CcmF no data 28 58
  Pseudomonas sp. S08-1 OH686_02635 cytochrome c-type biogenesis protein CcmF no data 29 53
  Dinoroseobacter shibae DFL-12 Dshi_3775 cytochrome c-type biogenesis protein CcmF (RefSeq) no data 30 46
  Dinoroseobacter shibae DFL-12 Dshi_4051 cytochrome c-type biogenesis protein CcmF (RefSeq) no data 30 46
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10825 heme lyase CcmF/NrfE family subunit no data 28 55
  Azospirillum sp. SherDot2 MPMX19_02533 Cytochrome c-type biogenesis protein CcmF no data 27 54
  Pseudomonas stutzeri RCH2 Psest_1759 c-type cytochrome biogenesis protein CcmF no data 34 43
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0172 Cytochrome c biogenesis factor strong 30 55
  Pectobacterium carotovorum WPP14 HER17_RS09015 heme lyase CcmF/NrfE family subunit cofit 28 58
  Caulobacter crescentus NA1000 CCNA_02848 heme chaperone-apocytochrome heme-lyase strong 25 74
  Caulobacter crescentus NA1000 Δfur CCNA_02848 heme chaperone-apocytochrome heme-lyase cofit 25 74
  Escherichia fergusonii Becca EFB2_04515 Cytochrome c-type biogenesis protein CcmF insig. 29 34
  Escherichia coli BL21 ECD_03946 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE insig. 29 32
  Escherichia coli ECRC101 OKFHMN_12800 nrfF heme lyase NrfEFG subunit NrfF insig. 29 32
  Escherichia coli ECRC101 MCAODC_03310 nrfF heme lyase NrfEFG subunit NrfF insig. 29 32
  Escherichia coli ECRC102 NIAGMN_10645 nrfF heme lyase NrfEFG subunit NrfF insig. 29 32
  Escherichia coli ECRC98 JDDGAC_16435 nrfF heme lyase NrfEFG subunit NrfF no data 29 32
  Escherichia coli ECRC99 KEDOAH_15350 nrfF heme lyase NrfEFG subunit NrfF no data 29 32
  Escherichia coli BW25113 b4074 nrfE heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE (NCBI) insig. 29 32
  Escherichia coli Nissle 1917 ECOLIN_RS23575 heme lyase CcmF/NrfE family subunit cofit 29 34
  Escherichia coli ECOR38 HEPCGN_11425 ccmF Cytochrome c biogenesis protein CcmF cofit 38 18
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03966 Cytochrome c-type biogenesis protein CcmF insig. 29 32
  Escherichia coli ECOR27 NOLOHH_05050 nrfF heme lyase NrfEFG subunit NrfF insig. 29 32
  Escherichia coli ECRC62 BNILDI_06475 ccmF Cytochrome c biogenesis protein CcmF insig. 29 32
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1457 Cytochrome c heme lyase subunit CcmF insig. 36 20
  Paraburkholderia sabiae LMG 24235 QEN71_RS28095 c-type cytochrome biogenesis protein CcsB strong 28 19
  Ralstonia sp. UNC404CL21Col ABZR87_RS02670 c-type cytochrome biogenesis protein CcsB no data 27 21
  Burkholderia phytofirmans PsJN BPHYT_RS17945 cytochrome C biogenesis protein cofit 28 16
  Herbaspirillum seropedicae SmR1 HSERO_RS00775 cytochrome C biogenesis protein no data 29 15
  Paraburkholderia graminis OAS925 ABIE53_003752 cytochrome c-type biogenesis protein CcsB insig. 28 16
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05603 cytochrome c-type biogenesis protein CcsB no data 29 16
  Bacteroides thetaiotaomicron VPI-5482 BT1605 cytochrome c biogenesis protein (NCBI ptt file) insig. 27 16
  Cupriavidus basilensis FW507-4G11 RR42_RS19080 cytochrome C biogenesis protein no data 26 18
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07020 c-type cytochrome biogenesis protein CcsB strong 26 21
  Ralstonia solanacearum GMI1000 RS_RS14960 c-type cytochrome biogenesis protein CcsB no data 26 21