Homologs of Atu1135 from Agrobacterium fabrum C58

hypothetical protein
SEED: Protein involved in catabolism of external DNA

101 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Agrobacterium fabrum C58 Atu1135 hypothetical protein insig. 100 100
o Rhizobium sp. OAE497 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 81 100
o Sinorhizobium meliloti 1021 SMc00608 hypothetical protein insig. 79 98
o Azospirillum sp. SherDot2 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J insig. 52 92
o Azospirillum brasilense Sp245 AZOBR_RS21900 lactate dehydrogenase sig. 53 92
o Pseudomonas aeruginosa MRSN321 DY961_RS10910 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ sig. 48 98
o Pseudomonas aeruginosa PA14 IKLFDK_28440 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 48 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS51160 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ sig. 48 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 46 93
o Magnetospirillum magneticum AMB-1 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 49 93
o Rhodopseudomonas palustris CGA009 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 49 91
o Klebsiella pneumoniae MKP103 KDGMDA_07435 Ribosomal RNA large subunit methyltransferase J insig. 44 97
o Klebsiella pneumoniae MRSN742743 KFA93_RS09710 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 44 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF515 Protein involved in catabolism of external DNA insig. 43 97
o Xanthobacter sp. DMC5 GFF4654 Ribosomal RNA large subunit methyltransferase J insig. 49 97
o Enterobacter sp. TBS_079 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J insig. 44 97
o Klebsiella michiganensis M5al BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 45 91
o Escherichia coli ECOR38 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 46 92
o Escherichia coli ECRC100 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 93
o Escherichia coli ECRC101 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 93
o Escherichia coli ECRC102 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 93
o Escherichia coli ECRC99 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase no data 45 93
o Enterobacter asburiae PDN3 EX28DRAFT_4062 Protein involved in catabolism of external DNA insig. 45 91
o Pseudomonas segetis P6 ACVTMO_RS20915 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 48 91
o Escherichia coli ECRC98 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 93
o Bosea sp. OAE506 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 46 93
o Rhodospirillum rubrum S1H Rru_A1938 Protein of unknown function DUF519 (NCBI) insig. 48 97
o Escherichia coli BL21 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent cofit 45 92
o Escherichia coli ECOR27 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 92
o Escherichia coli ECRC62 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase cofit 45 92
o Escherichia coli Nissle 1917 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 45 92
o Escherichia fergusonii Becca EFB2_00316 Ribosomal RNA large subunit methyltransferase J insig. 45 92
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J insig. 45 92
o Escherichia coli BW25113 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) insig. 45 92
o Pseudomonas sp. SVBP6 COO64_RS17660 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 45 98
o Dickeya dianthicola 67-19 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 97
o Serratia liquefaciens MT49 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 41 97
o Dickeya dianthicola ME23 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 42 97
o Rahnella sp. WP5 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 41 97
o Dickeya dadantii 3937 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 42 97
o Pseudomonas sp. DMC3 GFF3149 Ribosomal RNA large subunit methyltransferase J cofit 45 93
o Pseudomonas sp. S08-1 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase insig. 44 97
o Pectobacterium carotovorum WPP14 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ cofit 43 93
o Erwinia amylovora T8 OLJFJH_04555 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ cofit 41 97
o Pantoea sp. MT58 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 91
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS17840 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ cofit 43 91
o Pseudomonas stutzeri RCH2 Psest_0408 Protein involved in catabolism of external DNA sig. 46 99
o Pseudomonas syringae pv. syringae B728a Psyr_4772 Protein of unknown function DUF519 insig. 45 93
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4772 Protein of unknown function DUF519 insig. 45 93
o Pseudomonas putida KT2440 PP_4945 23S rRNA m(6)A2030 methyltransferase insig. 43 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 44 99
o Pseudomonas fluorescens FW300-N2E3 AO353_12840 lactate dehydrogenase insig. 46 93
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1481 Protein involved in catabolism of external DNA sig. 45 93
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12575 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 39 97
o Rhodanobacter sp. FW510-T8 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 44 98
o Erwinia tracheiphila SCR3 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 39 97
o Pseudomonas fluorescens SBW25 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 46 93
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 46 93
o Pseudomonas simiae WCS417 PS417_02200 lactate dehydrogenase no data 46 93
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS08040 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 44 98
o Pseudomonas orientalis W4I3 QF045_RS05260 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 46 93
o Pseudomonas fluorescens GW456-L13 PfGW456L13_219 Protein involved in catabolism of external DNA insig. 44 98
o Pseudomonas sp. RS175 PFR28_05056 Ribosomal RNA large subunit methyltransferase J insig. 46 93
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00676 Ribosomal RNA large subunit methyltransferase J cofit 45 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 93
o Ralstonia solanacearum UW163 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 93
o Shewanella amazonensis SB2B Sama_3563 hypothetical protein (RefSeq) insig. 42 93
o Shewanella oneidensis MR-1 SO4659 conserved hypothetical protein (NCBI ptt file) strong 42 98
o Pseudomonas fluorescens FW300-N2C3 AO356_08990 lactate dehydrogenase sig. 45 94
o Rhodanobacter denitrificans MT42 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 45 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 45 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 98
o Pseudomonas sp. BP01 JOY50_RS09970 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 43 98
o Ralstonia solanacearum PSI07 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ sig. 42 93
o Lysobacter sp. OAE881 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 42 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3679 Protein involved in catabolism of external DNA sig. 45 93
o Shewanella sp. ANA-3 Shewana3_4038 hypothetical protein (RefSeq) sig. 42 93
o Castellaniella sp019104865 MT123 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 41 94
o Ralstonia solanacearum GMI1000 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 42 93
o Paraburkholderia sabiae LMG 24235 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ insig. 41 96
o Methylophilus sp. DMC18 GFF488 Ribosomal RNA large subunit methyltransferase J insig. 41 93
o Herbaspirillum seropedicae SmR1 HSERO_RS10595 competence protein ComJ sig. 40 94
o Cupriavidus basilensis FW507-4G11 RR42_RS09005 competence protein ComJ insig. 41 93
o Shewanella loihica PV-4 Shew_3648 hypothetical protein (RefSeq) insig. 39 93
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04978 23S rRNA (adenine2030-N6)-methyltransferase insig. 41 96
o Burkholderia phytofirmans PsJN BPHYT_RS06880 competence protein ComJ insig. 40 96
o Paraburkholderia graminis OAS925 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase insig. 41 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1778.1 Protein involved in catabolism of external DNA insig. 41 98
o Sphingobium sp. HT1-2 GFF540 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) cofit 40 93
o Variovorax sp. OAS795 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ sig. 38 95
o Acinetobacter baumannii LAC-4 RR41_RS02490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ sig. 40 98
o Acinetobacter radioresistens SK82 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J strong 39 98
o Variovorax sp. SCN45 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) insig. 37 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1683 Protein involved in catabolism of external DNA cofit 37 95
o Acidovorax sp. GW101-3H11 Ac3H11_3047 Protein involved in catabolism of external DNA insig. 37 87
o Alteromonas macleodii MIT1002 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J insig. 35 95
o Phaeobacter inhibens DSM 17395 PGA1_c26480 Protein involved in catabolism of external DNA insig. 38 88
o Marinobacter adhaerens HP15 HP15_2563 protein containing DUF519 insig. 34 90
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ cofit 38 86
  Caulobacter crescentus NA1000 CCNA_01152 external DNA uptake/catabolism protein sig. 34 88
  Caulobacter crescentus NA1000 Δfur CCNA_01152 external DNA uptake/catabolism protein cofit 34 88