Homologs of Sama_1044 from Shewanella amazonensis SB2B

RNA polymerase sigma-38 factor (RefSeq)
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella amazonensis SB2B Sama_1044 RNA polymerase sigma-38 factor (RefSeq) sig. 100 100
o Shewanella oneidensis MR-1 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) sig. 89 98
o Shewanella sp. ANA-3 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) sig. 88 98
o Shewanella loihica PV-4 Shew_1213 RpoD family RNA polymerase sigma factor (RefSeq) insig. 85 100
o Alteromonas macleodii MIT1002 MIT1002_00625 RNA polymerase sigma factor RpoS strong 75 93
o Rahnella sp. WP5 EX31_RS07825 RNA polymerase sigma factor RpoS strong 73 99
o Pantoea sp. MT58 IAI47_04235 RNA polymerase sigma factor RpoS strong 73 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4788 RNA polymerase sigma factor RpoS strong 73 99
o Dickeya dadantii 3937 DDA3937_RS16875 RNA polymerase sigma factor RpoS no data 72 99
o Serratia liquefaciens MT49 IAI46_03790 RNA polymerase sigma factor RpoS cofit 71 99
o Enterobacter sp. TBS_079 MPMX20_03627 RNA polymerase sigma factor RpoS strong 73 99
o Enterobacter asburiae PDN3 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS strong 73 99
o Dickeya dianthicola ME23 DZA65_RS18020 RNA polymerase sigma factor RpoS sig. 72 99
o Escherichia coli BL21 ECD_02591 RNA polymerase, sigma S (sigma 38) factor cofit 80 86
o Escherichia fergusonii Becca EFB2_01169 RNA polymerase sigma factor RpoS cofit 80 86
o Escherichia coli ECOR27 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS strong 80 86
o Escherichia coli ECOR38 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS cofit 80 86
o Escherichia coli ECRC101 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS strong 80 86
o Escherichia coli ECRC102 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS strong 80 86
o Escherichia coli ECRC62 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS strong 80 86
o Escherichia coli ECRC98 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS no data 80 86
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00992 RNA polymerase sigma factor RpoS insig. 80 86
o Escherichia coli BW25113 b2741 rpoS RNA polymerase sigma factor (NCBI) strong 80 86
o Escherichia coli ECRC101 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS insig. 80 86
o Klebsiella michiganensis M5al BWI76_RS22645 RNA polymerase sigma factor RpoS strong 79 86
o Pectobacterium carotovorum WPP14 HER17_RS04350 RNA polymerase sigma factor RpoS strong 75 94
o Dickeya dianthicola 67-19 HGI48_RS16945 RNA polymerase sigma factor RpoS insig. 72 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_02835 RNA polymerase sigma factor RpoS cofit 69 99
o Erwinia tracheiphila SCR3 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS strong 79 86
o Pseudomonas sp. S08-1 OH686_18185 RNA polymerase sigma factor RpoS cofit 74 88
o Pseudomonas fluorescens SBW25 PFLU_RS06430 RNA polymerase sigma factor RpoS cofit 73 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06430 RNA polymerase sigma factor RpoS strong 73 88
o Pseudomonas putida KT2440 PP_1623 RNA polymerase, sigma S (sigma 38) factor strong 73 88
o Pseudomonas simiae WCS417 PS417_06365 RNA polymerase sigma factor strong 73 88
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4674 RNA polymerase sigma factor RpoS strong 73 88
o Pseudomonas fluorescens FW300-N2E3 AO353_16615 RNA polymerase sigma factor RpoS strong 73 88
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3115 RNA polymerase sigma factor RpoS strong 68 95
o Pseudomonas syringae pv. syringae B728a Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS sig. 73 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS cofit 73 88
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3037 RNA polymerase sigma factor RpoS strong 73 88
o Pseudomonas fluorescens FW300-N2C3 AO356_05885 RNA polymerase sigma factor RpoS strong 73 88
o Pseudomonas stutzeri RCH2 Psest_2806 RNA polymerase sigma factor RpoS strong 74 86
o Pseudomonas sp. RS175 PFR28_00427 RNA polymerase sigma factor RpoS strong 72 88
o Marinobacter adhaerens HP15 HP15_1283 RNA polymerase, sigma 70 subunit, RpoD family strong 70 85
  Escherichia coli ECRC99 KEDOAH_07640 rpoS RNA polymerase sigma factor RpoS no data 81 72
o Herbaspirillum seropedicae SmR1 HSERO_RS14830 RNA polymerase sigma factor RpoS insig. 50 96
o Dechlorosoma suillum PS Dsui_1971 RNA polymerase sigma factor RpoS cofit 54 83
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15235 RNA polymerase sigma factor RpoS strong 53 83
  Ralstonia solanacearum UW163 UW163_RS12700 RNA polymerase sigma factor RpoS sig. 53 83
o Ralstonia solanacearum GMI1000 RS_RS06045 RNA polymerase sigma factor RpoS strong 53 83
  Ralstonia solanacearum PSI07 RPSI07_RS18140 RNA polymerase sigma factor RpoS strong 53 83
  Ralstonia sp. UNC404CL21Col ABZR87_RS10875 RNA polymerase sigma factor RpoS strong 53 83
  Cupriavidus basilensis FW507-4G11 RR42_RS13185 RNA polymerase sigma factor RpoS strong 52 83
  Burkholderia phytofirmans PsJN BPHYT_RS09115 RNA polymerase sigma factor RpoS sig. 53 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00844 RNA polymerase, sigma 38 subunit, RpoS no data 53 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS22240 RNA polymerase sigma factor RpoS cofit 53 83
  Paraburkholderia graminis OAS925 ABIE53_002057 RNA polymerase nonessential primary-like sigma factor strong 53 83
o Synechococcus elongatus PCC 7942 Synpcc7942_0569 rpoD4 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like strong 44 83
o Variovorax sp. SCN45 GFF2842 RNA polymerase sigma factor RpoS insig. 47 83
  Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 44 72
  Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 44 72
o Variovorax sp. OAS795 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor insig. 47 83
  Fusobacterium nucleatum SB010 HUW76_03650 RNA polymerase sigma factor RpoD no data 42 78
  Synechococcus elongatus PCC 7942 Synpcc7942_1557 rpoD6 principal RNA polymerase sigma factor SigA strong 39 83
  Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 43 72
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 43 73
  Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 43 73
  Magnetospirillum magneticum AMB-1 AMB_RS03585 RNA polymerase sigma factor RpoD no data 44 70
  Bosea sp. OAE506 ABIE41_RS11995 RNA polymerase sigma factor RpoD no data 43 73
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 43 72
  Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 42 72
  Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 42 72
  Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 42 73
  Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 43 73
  Bifidobacterium breve UCC2003 BBR_RS16480 RNA polymerase sigma factor no data 39 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 43 72
  Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 42 73
  Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 42 73
  Azospirillum sp. SherDot2 MPMX19_00761 RNA polymerase sigma factor RpoD no data 43 72
  Azospirillum brasilense Sp245 AZOBR_RS10905 RNA polymerase sigma factor RpoD no data 43 72
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 40 87
  Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 40 83
  Dickeya dianthicola 67-19 HGI48_RS03110 RNA polymerase sigma factor RpoD no data 40 83
  Dickeya dianthicola ME23 DZA65_RS03105 RNA polymerase sigma factor RpoD no data 40 83
  Pantoea sp. MT58 IAI47_03050 RNA polymerase sigma factor RpoD no data 40 82
  Klebsiella michiganensis M5al BWI76_RS24555 RNA polymerase sigma factor RpoD no data 41 82
  Synechococcus elongatus PCC 7942 Synpcc7942_1746 rpoD2 group2 RNA polymerase sigma factor SigB strong 40 80
  Mycobacterium tuberculosis H37Rv Rv2710 RNA polymerase sigma factor SigB no data 39 79
  Serratia liquefaciens MT49 IAI46_22125 RNA polymerase sigma factor RpoD no data 40 82
  Pectobacterium carotovorum WPP14 HER17_RS18415 RNA polymerase sigma factor RpoD no data 40 82
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 42 70
  Rahnella sp. WP5 EX31_RS08195 RNA polymerase sigma factor RpoD no data 40 83
  Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 43 70
  Enterobacter asburiae PDN3 EX28DRAFT_3102 RNA polymerase, sigma 70 subunit, RpoD no data 40 82
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 40 85
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 42 78
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 42 78
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 42 78
  Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 42 69
  Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 40 79