Homologs of trmU from Shewanella oneidensis MR-1

trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file)
SEED: tRNA-specific 2-thiouridylase MnmA
KEGG: tRNA-specific 2-thiouridylase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2633 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) no data 100 100
o Shewanella sp. ANA-3 Shewana3_1747 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) no data 98 100
o Shewanella loihica PV-4 Shew_1560 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) no data 88 100
o Shewanella amazonensis SB2B Sama_2062 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) no data 86 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_05725 tRNA 2-thiouridine(34) synthase MnmA no data 76 99
o Alteromonas macleodii MIT1002 MIT1002_01828 tRNA-specific 2-thiouridylase MnmA no data 77 98
o Serratia liquefaciens MT49 IAI46_10440 tRNA 2-thiouridine(34) synthase MnmA no data 76 98
o Dickeya dadantii 3937 DDA3937_RS11485 tRNA 2-thiouridine(34) synthase MnmA no data 75 98
o Escherichia coli BL21 ECD_01131 tRNA(Gln,Lys,Glu) U34 2-thiouridylase no data 77 97
o Escherichia coli ECOR27 NOLOHH_20900 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC62 BNILDI_19065 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02535 tRNA-specific 2-thiouridylase MnmA no data 77 97
o Escherichia coli BW25113 b1133 ycfB orf, hypothetical protein (VIMSS) no data 77 97
o Escherichia coli ECOR38 HEPCGN_24220 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC101 OKFHMN_00745 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC101 MCAODC_22340 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC102 NIAGMN_24890 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC98 JDDGAC_06620 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Escherichia coli ECRC99 KEDOAH_24830 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 77 97
o Rahnella sp. WP5 EX31_RS24575 tRNA 2-thiouridine(34) synthase MnmA no data 74 98
o Dickeya dianthicola 67-19 HGI48_RS11530 tRNA 2-thiouridine(34) synthase MnmA cofit 74 98
o Dickeya dianthicola ME23 DZA65_RS11865 tRNA 2-thiouridine(34) synthase MnmA strong 74 98
o Escherichia fergusonii Becca EFB2_02842 tRNA-specific 2-thiouridylase MnmA no data 76 97
o Escherichia coli Nissle 1917 ECOLIN_RS06625 tRNA 2-thiouridine(34) synthase MnmA no data 76 97
o Enterobacter asburiae PDN3 EX28DRAFT_1797 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 77 97
o Klebsiella michiganensis M5al BWI76_RS11315 tRNA 2-thiouridine(34) synthase MnmA no data 76 97
o Enterobacter sp. TBS_079 MPMX20_01817 tRNA-specific 2-thiouridylase MnmA no data 76 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3418 tRNA-specific 2-thiouridylase MnmA no data 75 97
o Pantoea sp. MT58 IAI47_11915 tRNA 2-thiouridine(34) synthase MnmA no data 75 98
o Erwinia tracheiphila SCR3 LU632_RS14575 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 72 97
o Pectobacterium carotovorum WPP14 HER17_RS11625 tRNA 2-thiouridine(34) synthase MnmA no data 73 98
o Kangiella aquimarina DSM 16071 B158DRAFT_1839 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 69 100
o Pseudomonas syringae pv. syringae B728a Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 68 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 68 96
o Pseudomonas stutzeri RCH2 Psest_2021 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 68 96
o Pseudomonas fluorescens SBW25 PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA no data 67 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA no data 67 99
o Pseudomonas putida KT2440 PP_4014 tRNA-specific 2-thiouridylase MnmA no data 68 96
o Pseudomonas sp. S08-1 OH686_00210 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 67 98
o Pseudomonas simiae WCS417 PS417_16540 tRNA 2-thiouridylase no data 66 99
o Pseudomonas fluorescens FW300-N2E3 AO353_27705 tRNA 2-thiouridylase no data 66 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4048 tRNA-specific 2-thiouridylase MnmA no data 66 99
o Pseudomonas sp. RS175 PFR28_02619 tRNA-specific 2-thiouridylase MnmA no data 67 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2639 tRNA-specific 2-thiouridylase MnmA no data 65 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_286 tRNA-specific 2-thiouridylase MnmA no data 66 99
o Pseudomonas fluorescens FW300-N2C3 AO356_22110 tRNA 2-thiouridylase no data 66 99
o Marinobacter adhaerens HP15 HP15_2086 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 64 98
o Acinetobacter radioresistens SK82 MPMX26_01048 tRNA-specific 2-thiouridylase MnmA no data 61 96
o Ralstonia solanacearum GMI1000 RS_RS13625 tRNA 2-thiouridine(34) synthase MnmA no data 56 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS05735 tRNA 2-thiouridine(34) synthase MnmA no data 57 96
o Ralstonia solanacearum UW163 UW163_RS07890 tRNA 2-thiouridine(34) synthase MnmA no data 57 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS02185 tRNA 2-thiouridine(34) synthase MnmA strong 58 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS01330 tRNA 2-thiouridine(34) synthase MnmA no data 57 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00435 tRNA 2-thiouridine(34) synthase MnmA strong 58 95
o Ralstonia solanacearum PSI07 RPSI07_RS11565 tRNA 2-thiouridine(34) synthase MnmA no data 57 96
o Rhodanobacter denitrificans MT42 LRK55_RS00175 tRNA 2-thiouridine(34) synthase MnmA no data 58 95
o Cupriavidus basilensis FW507-4G11 RR42_RS17465 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 56 96
o Castellaniella sp019104865 MT123 ABCV34_RS06800 tRNA 2-thiouridine(34) synthase MnmA no data 56 96
o Herbaspirillum seropedicae SmR1 HSERO_RS03470 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 56 96
o Paraburkholderia graminis OAS925 ABIE53_000810 tRNA-specific 2-thiouridylase no data 54 97
o Burkholderia phytofirmans PsJN BPHYT_RS03360 tRNA-specific 2-thiouridylase MnmA no data 54 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04651 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 54 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS26740 tRNA 2-thiouridine(34) synthase MnmA no data 55 96
o Rhodanobacter sp. FW510-T8 OKGIIK_06875 mnmA tRNA 2-thiouridine(34) synthase MnmA no data 58 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2600 tRNA-specific 2-thiouridylase MnmA no data 55 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2758.1 tRNA-specific 2-thiouridylase MnmA no data 55 95
o Variovorax sp. OAS795 ABID97_RS04415 tRNA 2-thiouridine(34) synthase MnmA no data 54 96
o Acidovorax sp. GW101-3H11 Ac3H11_4372 tRNA-specific 2-thiouridylase MnmA no data 54 96
o Variovorax sp. SCN45 GFF4912 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) no data 53 96
o Lysobacter sp. OAE881 ABIE51_RS11510 tRNA 2-thiouridine(34) synthase MnmA strong 52 96
o Dechlorosoma suillum PS Dsui_3336 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 52 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3454 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 40 96
o Synechococcus elongatus PCC 7942 Synpcc7942_1509 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 40 97
o Rhodospirillum rubrum S1H Rru_A2024 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI) no data 38 98
o Fusobacterium nucleatum SB010 HUW76_04665 tRNA 2-thiouridine(34) synthase MnmA no data 38 96
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09945 tRNA 2-thiouridine(34) synthase MnmA no data 36 95
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS05205 tRNA 2-thiouridine(34) synthase MnmA no data 37 95
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02880 tRNA 2-thiouridine(34) synthase MnmA strong 37 94
o Phocaeicola dorei CL03T12C01 ABI39_RS05090 tRNA 2-thiouridine(34) synthase MnmA insig. 37 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11815 tRNA 2-thiouridine(34) synthase MnmA strong 37 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04980 tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase no data 37 97
o Bacteroides thetaiotaomicron VPI-5482 BT0155 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) strong 37 95
o Bacteroides ovatus ATCC 8483 BACOVA_01109 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase strong 35 96
  Phocaeicola dorei CL03T12C01 ABI39_RS02190 tRNA 2-thiouridine(34) synthase MnmA insig. 36 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10515 tRNA 2-thiouridine(34) synthase MnmA insig. 37 97
o Azospirillum sp. SherDot2 MPMX19_01658 tRNA-specific 2-thiouridylase MnmA no data 36 95
  Bacteroides thetaiotaomicron VPI-5482 BT3888 putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase (NCBI ptt file) no data 36 94
o Rhodopseudomonas palustris CGA009 TX73_006700 tRNA 2-thiouridine(34) synthase MnmA strong 34 95
o Bacteroides stercoris CC31F HMPREF1181_RS05285 tRNA 2-thiouridine(34) synthase MnmA insig. 36 95
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1884 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase no data 36 97
  Phocaeicola dorei CL03T12C01 ABI39_RS06605 tRNA 2-thiouridine(34) synthase MnmA insig. 37 98
  Bacteroides ovatus ATCC 8483 BACOVA_01282 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase sig. 37 94
o Caulobacter crescentus NA1000 CCNA_00941 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmA no data 33 97
o Caulobacter crescentus NA1000 Δfur CCNA_00941 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmA no data 33 97
  Bacteroides stercoris CC31F HMPREF1181_RS06930 tRNA 2-thiouridine(34) synthase MnmA sig. 35 96
o Phaeobacter inhibens DSM 17395 PGA1_c14340 tRNA-specific 2-thiouridylase MnmA no data 36 95
  Fusobacterium nucleatum SB010 HUW76_01170 tRNA 2-thiouridine(34) synthase MnmA cofit 37 95
o Rhizobium sp. OAE497 ABIE40_RS15520 tRNA 2-thiouridine(34) synthase MnmA no data 33 97
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS10900 tRNA 2-thiouridine(34) synthase MnmA no data 37 94
o Sinorhizobium meliloti 1021 SMc00659 tRNA-specific 2-thiouridylase MnmA no data 34 95