Conservation of cofitness between Xcc-8004.3669.1 and Xcc-8004.4314.1 in Xanthomonas campestris pv. campestris strain 8004

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 Xcc-8004.4314.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.28 16
Lysobacter sp. OAE881 0.70 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 ABIE51_RS18965 phosphoenolpyruvate carboxylase low > 62
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase low > 53
Rhodanobacter denitrificans MT42 0.60 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 LRK55_RS11810 phosphoenolpyruvate carboxylase low > 63
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABZR86_RS11555 phosphoenolpyruvate carboxylase low > 74
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 LRK54_RS12075 phosphoenolpyruvate carboxylase low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 LRK53_RS16490 phosphoenolpyruvate carboxylase low > 59
Marinobacter adhaerens HP15 0.45 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.24 HP15_795 phosphoenolpyruvate carboxylase low > 73
Castellaniella sp019104865 MT123 0.45 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 ABCV34_RS14805 phosphoenolpyruvate carboxylase 0.39 26
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 QEN71_RS24955 phosphoenolpyruvate carboxylase low > 153
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 ABZR87_RS16140 phosphoenolpyruvate carboxylase low > 80
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13170 23S rRNA methyltransferase 0.26 RR42_RS15905 phosphoenolpyruvate carboxylase low > 128
Acinetobacter radioresistens SK82 0.41 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 MPMX26_03013 Phosphoenolpyruvate carboxylase low > 36
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS09125 23S rRNA methyltransferase 0.24 BPHYT_RS05225 phosphoenolpyruvate carboxylase low > 109
Methylophilus sp. DMC18 0.41 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 GFF771 Phosphoenolpyruvate carboxylase low > 43
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.25 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 low > 103
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS14825 23S rRNA methyltransferase 0.25 HSERO_RS14670 phosphoenolpyruvate carboxylase low > 78
Ralstonia solanacearum PSI07 0.40 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 RPSI07_RS13100 phosphoenolpyruvate carboxylase low > 81
Ralstonia solanacearum UW163 0.40 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 UW163_RS09420 phosphoenolpyruvate carboxylase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 RALBFv3_RS04250 phosphoenolpyruvate carboxylase low > 76
Ralstonia solanacearum GMI1000 0.40 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 RS_RS11840 phosphoenolpyruvate carboxylase low > 80
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.25 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 79
Acinetobacter baumannii LAC-4 0.39 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 RR41_RS00155 phosphoenolpyruvate carboxylase low > 55
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.25 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 90
Dechlorosoma suillum PS 0.38 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.27 Dsui_1603 phosphoenolpyruvate carboxylase — —
Variovorax sp. SCN45 0.37 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.24 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 127
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.24 Psest_1557 Phosphoenolpyruvate carboxylase low > 67
Pseudomonas sp. DMC3 0.36 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 GFF2023 Phosphoenolpyruvate carboxylase low > 89
Pectobacterium carotovorum WPP14 0.35 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 HER17_RS20655 phosphoenolpyruvate carboxylase low > 75
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 GEMAOFIL_01382 Phosphoenolpyruvate carboxylase low > 93
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.23 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 76
Pseudomonas aeruginosa PA14 0.35 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 IKLFDK_18825 phosphoenolpyruvate carboxylase low > 100
Enterobacter sp. TBS_079 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 MPMX20_04524 Phosphoenolpyruvate carboxylase low > 85
Pseudomonas simiae WCS417 0.35 PS417_20155 23S rRNA methyltransferase 0.23 PS417_06060 phosphoenolpyruvate carboxylase low > 88
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.23 ECD_03841 phosphoenolpyruvate carboxylase low > 61
Escherichia coli ECOR38 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase low > 88
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase low > 76
Escherichia coli Nissle 1917 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 ECOLIN_RS22835 phosphoenolpyruvate carboxylase low > 55
Escherichia coli BW25113 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.23 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) low > 76
Klebsiella pneumoniae MKP103 0.34 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 KDGMDA_09355 phosphoenolpyruvate carboxylase low > 95
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase low > 74
Serratia liquefaciens MT49 0.34 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 IAI46_24525 phosphoenolpyruvate carboxylase low > 86
Escherichia coli ECRC62 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 BNILDI_05785 ppc phosphoenolpyruvate carboxylase low > 75
Escherichia coli ECRC102 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase low > 80
Escherichia coli ECRC98 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECRC100 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase low > 79
Escherichia coli ECRC99 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECRC101 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 MCAODC_04095 ppc phosphoenolpyruvate carboxylase low > 88
Escherichia fergusonii Becca 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 EFB2_04658 Phosphoenolpyruvate carboxylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.22 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 78
Erwinia amylovora T8 0.34 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 OLJFJH_06110 Phosphoenolpyruvate carboxylase low > 58
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.22 AO356_06185 phosphoenolpyruvate carboxylase low > 104
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.22 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.22 OH686_06795 Phosphoenolpyruvate carboxylase low > 80
Dickeya dianthicola ME23 0.33 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 DZA65_RS00895 phosphoenolpyruvate carboxylase low > 75
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.22 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 103
Shewanella loihica PV-4 0.33 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.23 Shew_0200 phosphoenolpyruvate carboxylase (RefSeq) low > 60
Dickeya dadantii 3937 0.33 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 DDA3937_RS20360 phosphoenolpyruvate carboxylase low > 74
Erwinia tracheiphila SCR3 0.33 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 LU632_RS19625 ppc phosphoenolpyruvate carboxylase low > 74
Pseudomonas segetis P6 0.33 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 MPMX49_01618 Phosphoenolpyruvate carboxylase low > 75
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.24 SO0274 ppc phosphoenolpyruvate carboxylase (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.33 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 IJEDHG_13035 ppc phosphoenolpyruvate carboxylase low > 61
Klebsiella michiganensis M5al 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.22 BWI76_RS00835 phosphoenolpyruvate carboxylase low > 92
Shewanella sp. ANA-3 0.33 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.24 Shewana3_3906 phosphoenolpyruvate carboxylase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 CSW01_13390 phosphoenolpyruvate carboxylase low > 62
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 PFR28_00368 Phosphoenolpyruvate carboxylase low > 88
Dickeya dianthicola 67-19 0.33 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 HGI48_RS00850 phosphoenolpyruvate carboxylase low > 71
Shewanella amazonensis SB2B 0.32 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.25 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) low > 62
Rahnella sp. WP5 0.32 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 EX31_RS14200 phosphoenolpyruvate carboxylase low > 89
Pseudomonas sp. SVBP6 0.32 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 COO64_RS19495 ppc phosphoenolpyruvate carboxylase low > 93
Pantoea sp. MT58 0.32 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 IAI47_00895 phosphoenolpyruvate carboxylase low > 76
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_02715 23S rRNA methyltransferase 0.23 AO353_16310 phosphoenolpyruvate carboxylase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas sp. BP01 0.32 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 JOY50_RS26030 ppc phosphoenolpyruvate carboxylase low > 84
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase 0.35 45
Pantoea agglomerans CFBP13505 P0401 0.32 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 PagCFBP13505_RS18445 phosphoenolpyruvate carboxylase low > 74
Pseudomonas putida KT2440 0.32 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 PP_1505 Phosphoenolpyruvate carboxylase low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.22 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Alteromonas macleodii MIT1002 0.26 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 MIT1002_03491 Phosphoenolpyruvate carboxylase low > 70
Synechococcus elongatus PCC 7942 0.18 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.23 Synpcc7942_2252 ppc phosphoenolpyruvate carboxylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.13 CA264_05530 phosphoenolpyruvate carboxylase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.16 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.13 Echvi_3727 Phosphoenolpyruvate carboxylase low > 79
Synechocystis sp000284455 PCC 6803 0.16 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 SGL_RS11290 phosphoenolpyruvate carboxylase — —
Xanthobacter sp. DMC5 0.15 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 GFF2267 Phosphoenolpyruvate carboxylase — —
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.26 TX73_009115 phosphoenolpyruvate carboxylase low > 86
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.21 CCNA_01560 phosphoenolpyruvate carboxylase low > 67
Caulobacter crescentus NA1000 0.13 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.21 CCNA_01560 phosphoenolpyruvate carboxylase low > 66
Sphingobium sp. HT1-2 0.13 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.22 GFF5056 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 95
Azospirillum sp. SherDot2 0.11 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.27 MPMX19_06050 Phosphoenolpyruvate carboxylase low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.24 A4249_RS12510 phosphoenolpyruvate carboxylase low > 48
Sphingomonas koreensis DSMZ 15582 0.10 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.22 Ga0059261_2719 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 68
Bifidobacterium breve UCC2003 0.10 BBR_RS16615 class I SAM-dependent RNA methyltransferase 0.19 BBR_RS10525 phosphoenolpyruvate carboxylase — —

Not shown: 14 genomes with orthologs for Xcc-8004.3669.1 only; 5 genomes with orthologs for Xcc-8004.4314.1 only