Conservation of cofitness between Xcc-8004.4073.1 and Xcc-8004.3281.1 in Xanthomonas campestris pv. campestris strain 8004

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14) 1.0 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.77 19
Lysobacter sp. OAE881 0.82 ABIE51_RS06180 amidophosphoribosyltransferase 0.70 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS06775 amidophosphoribosyltransferase 0.68 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.93 48
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_05570 purF amidophosphoribosyltransferase 0.68 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans MT42 0.71 LRK55_RS01105 amidophosphoribosyltransferase 0.65 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS01340 amidophosphoribosyltransferase 0.64 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1668 amidophosphoribosyltransferase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1668 amidophosphoribosyltransferase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) 0.13 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Shewanella loihica PV-4 0.62 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.17 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_05115 amidophosphoribosyltransferase 0.18 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella amazonensis SB2B 0.61 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.16 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.61 LU632_RS07865 purF amidophosphoribosyltransferase 0.16 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.66 41
Shewanella sp. ANA-3 0.61 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.18 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.92 10
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.15 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Serratia liquefaciens MT49 0.61 IAI46_17810 amidophosphoribosyltransferase 0.17 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.15 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Pantoea sp. MT58 0.61 IAI47_06275 amidophosphoribosyltransferase 0.16 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECOR38 0.61 HEPCGN_21910 purF amidophosphoribosyltransferase 0.15 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.82 40
Escherichia coli ECRC101 0.61 MCAODC_13755 purF amidophosphoribosyltransferase 0.15 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC62 0.61 BNILDI_13255 purF amidophosphoribosyltransferase 0.15 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.86 34
Escherichia fergusonii Becca 0.61 EFB2_01546 Amidophosphoribosyltransferase 0.15 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECRC102 0.61 NIAGMN_20485 purF amidophosphoribosyltransferase 0.15 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC99 0.61 KEDOAH_05480 purF amidophosphoribosyltransferase 0.15 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC100 0.61 OKFHMN_22715 purF amidophosphoribosyltransferase 0.15 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli Nissle 1917 0.61 ECOLIN_RS13405 amidophosphoribosyltransferase 0.15 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC98 0.61 JDDGAC_26675 purF amidophosphoribosyltransferase 0.15 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli BW25113 0.60 b2312 purF amidophosphoribosyltransferase (NCBI) 0.15 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.83 18
Escherichia coli BL21 0.60 ECD_02237 amidophosphoribosyltransferase 0.15 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.61 26
Klebsiella michiganensis M5al 0.60 BWI76_RS20350 amidophosphoribosyltransferase 0.16 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 57
Escherichia coli ECOR27 0.60 NOLOHH_14335 purF amidophosphoribosyltransferase 0.15 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.82 29
Enterobacter sp. TBS_079 0.60 MPMX20_03247 Amidophosphoribosyltransferase 0.15 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.85 37
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.15 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Dickeya dadantii 3937 0.60 DDA3937_RS14435 amidophosphoribosyltransferase 0.16 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rahnella sp. WP5 0.60 EX31_RS19570 amidophosphoribosyltransferase 0.18 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.60 HER17_RS07020 amidophosphoribosyltransferase 0.17 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 36
Shewanella oneidensis MR-1 0.60 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.17 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.83 48
Dickeya dianthicola 67-19 0.60 HGI48_RS14405 amidophosphoribosyltransferase 0.16 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.60 DZA65_RS15335 amidophosphoribosyltransferase 0.16 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Alteromonas macleodii MIT1002 0.59 MIT1002_02524 Amidophosphoribosyltransferase 0.17 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.58 ABIE53_004816 amidophosphoribosyltransferase 0.14 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_06060 amidophosphoribosyltransferase 0.15 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS33840 amidophosphoribosyltransferase 0.16 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.86 10
Ralstonia solanacearum GMI1000 0.57 RS_RS09930 amidophosphoribosyltransferase 0.17 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.57 UW163_RS11175 amidophosphoribosyltransferase 0.17 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS02550 amidophosphoribosyltransferase 0.17 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum PSI07 0.57 RPSI07_RS14765 amidophosphoribosyltransferase 0.17 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS14465 amidophosphoribosyltransferase 0.16 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS14325 amidophosphoribosyltransferase 0.14 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS17680 amidophosphoribosyltransferase 0.15 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.88 13
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS16445 amidophosphoribosyltransferase 0.18 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis JJ 0.34 MMJJ_RS08440 amidophosphoribosyltransferase 0.21 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.40 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis S2 0.32 MMP_RS05915 amidophosphoribosyltransferase 0.20 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01730 amidophosphoribosyltransferase 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Caulobacter crescentus NA1000 0.31 CCNA_01730 amidophosphoribosyltransferase 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0161 purF amidophosphoribosyltransferase (TIGR) 0.15 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Rhodospirillum rubrum S1H 0.30 Rru_A0404 Amidophosphoribosyl transferase (NCBI) 0.40 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Mycobacterium tuberculosis H37Rv 0.30 Rv0808 Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase) 0.12 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —
Bosea sp. OAE506 0.30 ABIE41_RS17810 amidophosphoribosyltransferase 0.39 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bifidobacterium breve UCC2003 0.30 BBR_RS13380 amidophosphoribosyltransferase 0.11 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase low > 34
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2307 amidophosphoribosyltransferase (RefSeq) 0.15 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Azospirillum sp. SherDot2 0.30 MPMX19_00906 Amidophosphoribosyltransferase 0.37 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_2132 amidophosphoribosyltransferase (RefSeq) 0.37 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.29 TX73_015990 amidophosphoribosyltransferase 0.37 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS08310 amidophosphoribosyltransferase 0.37 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c10810 amidophosphoribosyltransferase PurF 0.40 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS03735 amidophosphoribosyltransferase 0.39 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.28 ABIE40_RS06270 amidophosphoribosyltransferase 0.14 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.28 Atu1075 amidophosphoribosyltransferase 0.14 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14) 0.42 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS10545 amidophosphoribosyltransferase 0.39 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.27 SMc00554 amidophosphoribosyltransferase 0.40 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Fusobacterium nucleatum SB010 0.24 HUW76_05170 amidophosphoribosyltransferase 0.14 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase low > 35
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS10430 amidophosphoribosyltransferase 0.13 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05376 putative amidophosphoribosyltransferase 0.14 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.11 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) 0.15 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Phocaeicola vulgatus CL09T03C04 0.11 HMPREF1058_RS04675 amidophosphoribosyltransferase 0.12 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.11 ABI39_RS18960 amidophosphoribosyltransferase 0.12 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase low > 72
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_4653 Glutamine phosphoribosylpyrophosphate amidotransferase 0.09 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —

Not shown: 19 genomes with orthologs for Xcc-8004.4073.1 only; 4 genomes with orthologs for Xcc-8004.3281.1 only