| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 1.0 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | 0.57 | 20 |
| Lysobacter sp. OAE881 | 0.71 | ABIE51_RS06805 | | metalloprotease PmbA | 0.63 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.60 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.39 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.60 | LRK54_RS03375 | | metalloprotease PmbA | 0.39 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.60 | LRK55_RS03125 | | metalloprotease PmbA | 0.39 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.59 | ABZR86_RS21700 | | metalloprotease PmbA | 0.41 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | low | > 74 |
| Pseudomonas putida KT2440 | 0.47 | PP_0942 | | regulatory protease | 0.40 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. S08-1 | 0.47 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.40 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.41 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.41 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Rahnella sp. WP5 | 0.47 | EX31_RS12320 | | metalloprotease PmbA | 0.39 | EX31_RS12400 | | RNA polymerase factor sigma-54 | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_07085 | | peptidase PmbA | 0.40 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.41 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.40 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.40 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.41 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.41 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Variovorax sp. SCN45 | 0.46 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.29 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.39 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS20090 | | metalloprotease PmbA | 0.39 | HER17_RS20060 | | RNA polymerase factor sigma-54 | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00230 | | peptidase PmbA | 0.37 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | low | > 70 |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.36 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.45 | IAI46_22575 | | metalloprotease PmbA | 0.40 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.29 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli Nissle 1917 | 0.45 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.39 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Shewanella oneidensis MR-1 | 0.45 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.36 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Escherichia coli BL21 | 0.45 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.39 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Escherichia fergusonii Becca | 0.45 | EFB2_04298 | | Metalloprotease PmbA | 0.39 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.39 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.39 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.45 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.39 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.39 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.39 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC62 | 0.45 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.39 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.39 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 0.45 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.40 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.39 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.39 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS02850 | | metalloprotease PmbA | 0.38 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.39 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pantoea sp. MT58 | 0.44 | IAI47_02765 | | metalloprotease PmbA | 0.38 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_12845 | | metalloprotease PmbA | 0.39 | CSW01_12815 | | RNA polymerase sigma-54 factor | low | > 62 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS15845 | | metalloprotease PmbA | 0.34 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.34 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | low | > 76 |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_00517 | | Metalloprotease PmbA | 0.39 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.35 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS09265 | | peptidase C69 | 0.34 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.34 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | low | > 81 |
| Castellaniella sp019104865 MT123 | 0.43 | ABCV34_RS10610 | | metalloprotease PmbA | 0.27 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | low | > 48 |
| Shewanella loihica PV-4 | 0.43 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.36 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 60 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS01500 | | metalloprotease PmbA | 0.39 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS09660 | | metalloprotease PmbA | 0.35 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | low | > 80 |
| Dechlorosoma suillum PS | 0.43 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.37 | Dsui_0704 | | RNA polymerase sigma-54 factor | low | > 51 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS01480 | | metalloprotease PmbA | 0.39 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | low | > 75 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS01415 | | metalloprotease PmbA | 0.39 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | low | > 71 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS14750 | | peptidase PMbA | 0.34 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS04700 | | metalloprotease PmbA | 0.35 | RS_RS02020 | | RNA polymerase sigma-54 factor | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.29 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | low | > 79 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003116 | | PmbA protein | 0.35 | ABIE53_000718 | | RNA polymerase sigma-54 factor | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.35 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 103 |
| Erwinia tracheiphila SCR3 | 0.41 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.38 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS14705 | | peptidase C69 | 0.36 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.29 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.41 | QEN71_RS04270 | | metalloprotease PmbA | 0.35 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | low | > 153 |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.32 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 40 |
| Rhodopseudomonas palustris CGA009 | 0.32 | TX73_005930 | | TldD/PmbA family protein | 0.24 | TX73_000260 | | RNA polymerase factor sigma-54 | low | > 86 |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS11930 | | modulator protein | 0.24 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | low | > 97 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.23 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.29 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.25 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 68 |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.28 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS22120 | | TldD/PmbA family protein | 0.26 | AMB_RS19925 | | RNA polymerase sigma-54 factor | — | — |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00897 | | PMBA protein | 0.25 | SMc01139 | | RNA polymerase factor sigma-54 | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.18 | Dshi_3584 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 | 0.26 | CCNA_00311 | | Zn-dependent protease family protein | 0.30 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_00311 | | Zn-dependent protease family protein | 0.30 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 67 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.26 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | low | > 107 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.25 | Atu0332 | | RNA polymerase sigma-54 factor | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.24 | A4249_RS09195 | | TldD/PmbA family protein | 0.26 | A4249_RS16075 | | RNA polymerase factor sigma-54 | low | > 48 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.19 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.20 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.19 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.20 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | — | — |
| Parabacteroides merdae CL09T00C40 | 0.17 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.24 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | low | > 61 |
Not shown: 2 genomes with orthologs for Xcc-8004.1885.1 only; 12 genomes with orthologs for Xcc-8004.1662.1 only