| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_001590 | | ATP-dependent protease ATPase subunit HslU | 1.0 | TX73_006700 | | tRNA 2-thiouridine(34) synthase MnmA | 0.43 | 20 |
| Bosea sp. OAE506 | 0.78 | ABIE41_RS04445 | | ATP-dependent protease ATPase subunit HslU | 0.62 | ABIE41_RS10855 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Rhizobium sp. OAE497 | 0.76 | ABIE40_RS19475 | | ATP-dependent protease ATPase subunit HslU | 0.61 | ABIE40_RS15520 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Agrobacterium fabrum C58 | 0.75 | Atu0045 | | heat shock chaperone | 0.58 | Atu3703 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Sinorhizobium meliloti 1021 | 0.75 | SMc02577 | | ATP-dependent protease ATP-binding subunit HslU | 0.62 | SMc00659 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Azospirillum sp. SherDot2 | 0.72 | MPMX19_02549 | | ATP-dependent protease ATPase subunit HslU | 0.55 | MPMX19_01658 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Rhodospirillum rubrum S1H | 0.71 | Rru_A3600 | | Heat shock protein HslU (NCBI) | 0.49 | Rru_A2024 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.71 | AMB_RS22955 | | ATP-dependent protease ATPase subunit HslU | 0.47 | AMB_RS15210 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.69 | PGA1_c35240 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.55 | PGA1_c14340 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.67 | Dshi_3441 | | heat shock protein HslVU, ATPase subunit HslU (RefSeq) | 0.55 | Dshi_1506 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.65 | A4249_RS10990 | | ATP-dependent protease ATPase subunit HslU | 0.55 | A4249_RS08645 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Caulobacter crescentus NA1000 | 0.63 | CCNA_03844 | | ATP-dependent endopeptidase hsl ATP-binding subunit HslU | 0.56 | CCNA_00941 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmA | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.63 | CCNA_03844 | | ATP-dependent endopeptidase hsl ATP-binding subunit HslU | 0.56 | CCNA_00941 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmA | — | — |
| Pantoea sp. MT58 | 0.61 | IAI47_00845 | | HslU--HslV peptidase ATPase subunit | 0.24 | IAI47_11915 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS19675 | hslU | HslU--HslV peptidase ATPase subunit | 0.27 | LU632_RS14575 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Shewanella loihica PV-4 | 0.60 | Shew_0374 | hslU | ATP-dependent protease ATP-binding subunit (RefSeq) | 0.26 | Shew_1560 | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.60 | DDA3937_RS00915 | | HslU--HslV peptidase ATPase subunit | 0.27 | DDA3937_RS11485 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.60 | CSW01_13510 | | HslU--HslV peptidase ATPase subunit | 0.25 | CSW01_05725 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_3339 | | ATP-dependent protease HslVU, ATPase subunit | 0.45 | Ga0059261_1884 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_04538 | | ATP-dependent protease ATPase subunit HslU | 0.25 | MPMX20_01817 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Escherichia fergusonii Becca | 0.59 | EFB2_04687 | | ATP-dependent protease ATPase subunit HslU | 0.25 | EFB2_02842 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS22635 | | HslU--HslV peptidase ATPase subunit | 0.25 | ECOLIN_RS06625 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS05120 | | ATP-dependent protease ATPase subunit HslU | 0.27 | ABZR87_RS01330 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli ECRC62 | 0.59 | BNILDI_05645 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | BNILDI_19065 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF2313 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.25 | GFF3418 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Escherichia coli ECOR38 | 0.59 | HEPCGN_12385 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | HEPCGN_24220 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3700 | hslU | ATP-dependent protease ATP-binding subunit HslU (RefSeq) | 0.27 | Shewana3_1747 | mnmA | tRNA-specific 2-thiouridylase MnmA (RefSeq) | — | — |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_14420 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | KEDOAH_24830 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_04120 | | ATP-dependent protease ATPase subunit HslU | 0.25 | OHPLBJKB_02535 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_05885 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | NOLOHH_20900 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli ECRC100 | 0.59 | OKFHMN_13740 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | OKFHMN_00745 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_11495 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | NIAGMN_24890 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli ECRC101 | 0.59 | MCAODC_04240 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | MCAODC_22340 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_17365 | hslU | HslU--HslV peptidase ATPase subunit | 0.25 | JDDGAC_06620 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | low | > 86 |
| Marinobacter adhaerens HP15 | 0.59 | HP15_465 | | heat shock protein HslVU, ATPase subunit HslU | 0.27 | HP15_2086 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Escherichia coli BW25113 | 0.59 | b3931 | hslU | ATP-dependent protease ATP-binding subunit (NCBI) | 0.25 | b1133 | ycfB | orf, hypothetical protein (VIMSS) | — | — |
| Escherichia coli BL21 | 0.59 | ECD_03816 | | molecular chaperone and ATPase component of HslUV protease | 0.25 | ECD_01131 | | tRNA(Gln,Lys,Glu) U34 2-thiouridylase | — | — |
| Rahnella sp. WP5 | 0.59 | EX31_RS14245 | | HslU--HslV peptidase ATPase subunit | 0.26 | EX31_RS24575 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS21505 | | HslU--HslV peptidase ATPase subunit | 0.26 | DZA65_RS11865 | | tRNA 2-thiouridine(34) synthase MnmA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS20460 | | HslU--HslV peptidase ATPase subunit | 0.26 | HGI48_RS11530 | | tRNA 2-thiouridine(34) synthase MnmA | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_03659 | | Unfoldase HslU | 0.27 | MIT1002_01828 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Shewanella oneidensis MR-1 | 0.59 | SO4163 | hslU | heat shock protein HslVU, ATPase subunit HslU (NCBI ptt file) | 0.27 | SO2633 | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) | — | — |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS00210 | | HslU--HslV peptidase ATPase subunit | 0.25 | RS_RS13625 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Serratia liquefaciens MT49 | 0.59 | IAI46_24575 | | HslU--HslV peptidase ATPase subunit | 0.27 | IAI46_10440 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Shewanella amazonensis SB2B | 0.59 | Sama_0440 | hslU | ATP-dependent protease ATP-binding subunit HslU (RefSeq) | 0.26 | Sama_2062 | mnmA | tRNA-specific 2-thiouridylase MnmA (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_4404 | | ATP-dependent protease HslVU, ATPase subunit | 0.25 | EX28DRAFT_1797 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS23740 | | ATP-dependent protease ATPase subunit HslU | 0.26 | RPSI07_RS11565 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_12425 | | ATP-dependent protease ATP-binding subunit HslU | 0.30 | AO353_27705 | | tRNA 2-thiouridylase | — | — |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_2005 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.24 | Ac3H11_4372 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS01065 | | ATP-dependent protease ATP-binding subunit HslU | 0.24 | RR42_RS17465 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS00850 | | HslU--HslV peptidase ATPase subunit | 0.26 | HER17_RS11625 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Dechlorosoma suillum PS | 0.58 | Dsui_0580 | | ATP-dependent protease HslVU, ATPase subunit | 0.24 | Dsui_3336 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.58 | GFF553 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.24 | GFF2600 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Klebsiella michiganensis M5al | 0.58 | BWI76_RS00750 | | ATP-dependent protease ATP-binding subunit HslU | 0.25 | BWI76_RS11315 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.58 | RALBFv3_RS09625 | | ATP-dependent protease ATPase subunit HslU | 0.25 | RALBFv3_RS05735 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas sp. RS175 | 0.58 | PFR28_04998 | | ATP-dependent protease ATPase subunit HslU | 0.29 | PFR28_02619 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Ralstonia solanacearum UW163 | 0.58 | UW163_RS03955 | | ATP-dependent protease ATPase subunit HslU | 0.25 | UW163_RS07890 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS15040 | | ATP-dependent protease ATPase subunit HslU | 0.24 | ABZR86_RS02185 | | tRNA 2-thiouridine(34) synthase MnmA | low | > 74 |
| Lysobacter sp. OAE881 | 0.58 | ABIE51_RS03045 | | ATP-dependent protease ATPase subunit HslU | 0.23 | ABIE51_RS11510 | | tRNA 2-thiouridine(34) synthase MnmA | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.852.1 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.21 | Xcc-8004.2758.1 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_1553 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.30 | Pf1N1B4_4048 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Variovorax sp. SCN45 | 0.58 | GFF4483 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.24 | GFF4912 | | tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS08520 | | ATP-dependent protease ATPase subunit HslU | 0.24 | LRK54_RS00435 | | tRNA 2-thiouridine(34) synthase MnmA | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.57 | OKGIIK_15315 | hslU | ATP-dependent protease ATPase subunit HslU | 0.22 | OKGIIK_06875 | mnmA | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.57 | Psyr_0394 | | Heat shock protein HslU | 0.30 | Psyr_3190 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.57 | Psyr_0394 | | Heat shock protein HslU | 0.30 | Psyr_3190 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Variovorax sp. OAS795 | 0.57 | ABID97_RS06185 | | ATP-dependent protease ATPase subunit HslU | 0.23 | ABID97_RS04415 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas putida KT2440 | 0.57 | PP_5001 | | protease HslVU, ATPase component | 0.30 | PP_4014 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS01960 | | ATP-dependent protease ATPase subunit HslU | 0.29 | PFLU_RS18580 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS01960 | | ATP-dependent protease ATPase subunit HslU | 0.29 | PFLU_RS18580 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_3937 | | ATP-dependent protease HslVU, ATPase subunit | 0.31 | Psest_2021 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_000421 | | ATP-dependent HslUV protease ATP-binding subunit HslU | 0.25 | ABIE53_000810 | | tRNA-specific 2-thiouridylase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_02207 | | ATP-dependent HslUV protease ATP-binding subunit HslU | 0.25 | H281DRAFT_04651 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Pseudomonas simiae WCS417 | 0.56 | PS417_01915 | | ATP-dependent protease ATP-binding subunit HslU | 0.29 | PS417_16540 | | tRNA 2-thiouridylase | — | — |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS01630 | | ATP-dependent protease ATPase subunit HslU | 0.26 | BPHYT_RS03360 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_09460 | | ATP-dependent protease ATP-binding subunit HslU | 0.29 | AO356_22110 | | tRNA 2-thiouridylase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3770 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.29 | Pf6N2E2_286 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS00915 | | ATP-dependent protease | 0.23 | HSERO_RS03470 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_0747 | | ATP-dependent protease HslVU, ATPase subunit | 0.28 | B158DRAFT_1839 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Pseudomonas sp. S08-1 | 0.56 | OH686_10100 | | ATP-dependent protease HslVU, ATPase subunit | 0.30 | OH686_00210 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_290 | | ATP-dependent hsl protease ATP-binding subunit HslU | 0.30 | PfGW456L13_2639 | | tRNA-specific 2-thiouridylase MnmA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS00330 | | ATP-dependent protease ATPase subunit HslU | 0.25 | QEN71_RS26740 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.54 | DVU1467 | hslU | heat shock protein HslVU, ATPase subunit HslU (TIGR) | 0.22 | DVU0807 | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) | — | — |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS13410 | | ATP-dependent protease ATPase subunit HslU | 0.23 | ABCV34_RS06800 | | tRNA 2-thiouridine(34) synthase MnmA | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.53 | DvMF_0307 | hslU | ATP-dependent protease ATP-binding subunit HslU (RefSeq) | 0.21 | DvMF_2839 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_00055 | | ATP-dependent protease ATP-binding subunit HslU | 0.31 | CA264_04980 | | tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.50 | Echvi_4669 | | ATP-dependent protease HslVU, ATPase subunit | 0.24 | Echvi_3454 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | — | — |
Not shown: 1 genomes with orthologs for TX73_001590 only; 13 genomes with orthologs for TX73_006700 only