| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc00960 | | hypothetical protein | 1.0 | SMc04403 | | peptidyl-dipeptidase A protein | 0.29 | 14 |
| Rhizobium sp. OAE497 | 0.88 | ABIE40_RS04050 | | metalloprotease TldD | 0.79 | ABIE40_RS18135 | | M3 family metallopeptidase | 0.84 | 64 |
| Agrobacterium fabrum C58 | 0.88 | Atu0765 | | TldD | 0.80 | Atu2664 | | peptidyl-dipeptidase | 0.17 | 48 |
| Rhodopseudomonas palustris CGA009 | 0.69 | TX73_004255 | | metalloprotease TldD | 0.50 | TX73_004495 | | M3 family metallopeptidase | low | > 86 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS10600 | | peptidase C69 | 0.50 | AZOBR_RS23485 | | peptidase M3 | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03522 | | Zn-dependent protease TldD | 0.41 | CCNA_03816 | | peptidyl-dipeptidase DCP | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.60 | PGA1_c06240 | | protein TldD | 0.51 | PGA1_c26590 | | peptidyl-dipeptidase Dcp | 0.76 | 1 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03522 | | Zn-dependent protease TldD | 0.41 | CCNA_03816 | | peptidyl-dipeptidase DCP | 0.77 | 18 |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.46 | Dshi_2973 | | Peptidyl-dipeptidase Dcp (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.40 | Ga0059261_2479 | | Zn-dependent oligopeptidases | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.57 | A4249_RS10860 | | metalloprotease TldD | 0.38 | A4249_RS12525 | | M3 family metallopeptidase | low | > 48 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_00227 | | protease TldD | 0.39 | MIT1002_00401 | | Peptidyl-dipeptidase dcp | low | > 70 |
| Pseudomonas putida KT2440 | 0.52 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | 0.27 | PP_0096 | | oligopeptidase A | low | > 96 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS06795 | | metalloprotease TldD | 0.38 | ABIE51_RS09155 | | M3 family metallopeptidase | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.26 | GFF4214 | | Oligopeptidase A (EC 3.4.24.70) | low | > 90 |
| Variovorax sp. OAS795 | 0.51 | ABID97_RS06335 | | metalloprotease TldD | 0.26 | ABID97_RS14080 | | M3 family metallopeptidase | 0.89 | 2 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS01105 | | metalloprotease TldD | 0.25 | ABZR87_RS13490 | | M3 family metallopeptidase | 0.44 | 21 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | 0.25 | Ac3H11_4097 | | Oligopeptidase A (EC 3.4.24.70) | 0.42 | 8 |
| Variovorax sp. SCN45 | 0.51 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.26 | GFF963 | | Oligopeptidase A (EC 3.4.24.70) | low | > 127 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.51 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | Xcc-8004.301.1 | | Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS11850 | | metalloprotease TldD | 0.25 | RPSI07_RS15795 | | oligopeptidase A | low | > 81 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.27 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.27 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | low | > 86 |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS13315 | | metalloprotease TldD | 0.25 | RS_RS08035 | | oligopeptidase A | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS21715 | | metalloprotease TldD | 0.36 | ABZR86_RS12690 | | peptidyl-dipeptidase Dcp | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS05875 | | protease TldD | 0.25 | RR42_RS07340 | | oligopeptidase A | low | > 128 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_05215 | | protease TldD | 0.27 | AO353_10775 | | oligopeptidase A | low | > 101 |
| Ralstonia solanacearum IBSBF1503 | 0.50 | RALBFv3_RS05455 | | metalloprotease TldD | 0.25 | RALBFv3_RS01690 | | oligopeptidase A | 0.68 | 49 |
| Ralstonia solanacearum UW163 | 0.50 | UW163_RS08170 | | metalloprotease TldD | 0.25 | UW163_RS15000 | | oligopeptidase A | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_3401 | | putative Zn-dependent protease-like protein | 0.26 | Dsui_0046 | | Zn-dependent oligopeptidase | 0.65 | 14 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS04340 | | metalloprotease TldD | 0.27 | PFLU_RS00240 | | oligopeptidase A | 0.44 | 84 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_04285 | | protease TldD | 0.27 | PS417_00245 | | oligopeptidase A | 0.50 | 7 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS04340 | | metalloprotease TldD | 0.27 | PFLU_RS00240 | | oligopeptidase A | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.50 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.27 | Pf6N2E2_4091 | | Oligopeptidase A (EC 3.4.24.70) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.27 | PfGW456L13_624 | | Oligopeptidase A (EC 3.4.24.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.50 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.27 | Pf1N1B4_1844 | | Oligopeptidase A (EC 3.4.24.70) | low | > 87 |
| Pantoea sp. MT58 | 0.50 | IAI47_02465 | | metalloprotease TldD | 0.31 | IAI47_09830 | | peptidyl-dipeptidase Dcp | low | > 76 |
| Pseudomonas fluorescens FW300-N2C3 | 0.50 | AO356_07095 | | protease TldD | 0.27 | AO356_11120 | | oligopeptidase A | low | > 104 |
| Vibrio cholerae E7946 ATCC 55056 | 0.49 | CSW01_02220 | | metalloprotease TldD | 0.27 | CSW01_01010 | | oligopeptidase A | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_10280 | tldD | metalloprotease TldD | 0.39 | OKGIIK_00370 | | M3 family peptidase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS03145 | | metalloprotease TldD | 0.38 | LRK55_RS06015 | | M3 family metallopeptidase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS03395 | | metalloprotease TldD | 0.38 | LRK54_RS06270 | | M3 family metallopeptidase | low | > 59 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.45 | B158DRAFT_1374 | | Zn-dependent oligopeptidases | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.28 | Psest_4320 | | Zn-dependent oligopeptidases | low | > 67 |
| Dickeya dadantii 3937 | 0.49 | DDA3937_RS01460 | | metalloprotease TldD | 0.27 | DDA3937_RS21265 | | oligopeptidase A | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS03540 | | peptidase C69 | 0.25 | BPHYT_RS12875 | | oligopeptidase A | low | > 109 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_00161 | | Metalloprotease TldD | 0.27 | PFR28_04699 | | Oligopeptidase A | low | > 88 |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS02590 | | metalloprotease TldD | 0.23 | ABCV34_RS04180 | | M3 family metallopeptidase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS07155 | | peptidase C69 | 0.27 | HSERO_RS07290 | | oligopeptidase A | 0.39 | 2 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS26555 | | metalloprotease TldD | 0.26 | QEN71_RS05695 | | M3 family metallopeptidase | 0.87 | 29 |
| Dickeya dianthicola 67-19 | 0.49 | HGI48_RS01380 | | metalloprotease TldD | 0.27 | HGI48_RS00045 | | oligopeptidase A | low | > 71 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_01980 | tldD | metalloprotease TldD | 0.35 | BNILDI_17135 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS18595 | | metalloprotease TldD | 0.34 | ECOLIN_RS08805 | | peptidyl-dipeptidase Dcp | — | — |
| Escherichia coli BW25113 | 0.48 | b3244 | tldD | predicted peptidase (NCBI) | 0.35 | b1538 | dcp | dipeptidyl carboxypeptidase II (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_00460 | | Metalloprotease TldD | 0.35 | OHPLBJKB_02174 | | Dipeptidyl carboxypeptidase | low | > 73 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22685 | | metalloprotease TldD | 0.36 | IAI46_11800 | | peptidyl-dipeptidase Dcp | low | > 86 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_09555 | tldD | metalloprotease TldD | 0.35 | NOLOHH_18645 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Escherichia fergusonii Becca | 0.48 | EFB2_00586 | | Metalloprotease TldD | 0.35 | EFB2_02418 | | Dipeptidyl carboxypeptidase | low | > 86 |
| Escherichia coli BL21 | 0.48 | ECD_03104 | | putative peptidase | 0.35 | ECD_01497 | | dipeptidyl carboxypeptidase II | — | — |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_16620 | tldD | metalloprotease TldD | 0.35 | HEPCGN_26925 | dcp | peptidyl-dipeptidase Dcp | low | > 85 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_08275 | tldD | metalloprotease TldD | 0.35 | MCAODC_16905 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_21380 | tldD | metalloprotease TldD | 0.35 | JDDGAC_03530 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Escherichia coli ECRC101 | 0.48 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.35 | OKFHMN_01020 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Dickeya dianthicola ME23 | 0.48 | DZA65_RS01440 | | metalloprotease TldD | 0.28 | DZA65_RS00035 | | oligopeptidase A | low | > 75 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_15515 | tldD | metalloprotease TldD | 0.35 | NIAGMN_25165 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_10395 | tldD | metalloprotease TldD | 0.35 | KEDOAH_27410 | dcp | peptidyl-dipeptidase Dcp | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | 0.33 | GFF2498 | | Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) | low | > 78 |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | 0.42 | Shewana3_2492 | | peptidyl-dipeptidase Dcp (RefSeq) | low | > 73 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.26 | OH686_12360 | | Oligopeptidase A | 0.67 | 32 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_04151 | | Metalloprotease TldD | 0.34 | MPMX20_02100 | | Dipeptidyl carboxypeptidase | low | > 85 |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS25470 | | metalloprotease TldD | 0.32 | BWI76_RS15470 | | dipeptidyl carboxypeptidase II | low | > 92 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.24 | H281DRAFT_00461 | | oligopeptidase A Metallo peptidase. MEROPS family M03A | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.48 | ABIE53_000851 | | TldD protein | 0.26 | ABIE53_002798 | | oligopeptidase A | 0.55 | 3 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS20140 | | metalloprotease TldD | 0.27 | HER17_RS21300 | | oligopeptidase A | low | > 75 |
| Shewanella loihica PV-4 | 0.47 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.43 | Shew_2161 | | peptidyl-dipeptidase Dcp (RefSeq) | low | > 60 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS21420 | tldD | metalloprotease TldD | 0.28 | LU632_RS19470 | prlC | oligopeptidase A | low | > 74 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.34 | EX28DRAFT_1449 | | Zn-dependent oligopeptidases | low | > 76 |
| Rahnella sp. WP5 | 0.47 | EX31_RS12265 | | metalloprotease TldD | 0.35 | EX31_RS05310 | | peptidyl-dipeptidase Dcp | low | > 89 |
| Shewanella amazonensis SB2B | 0.46 | Sama_0474 | | TldD protein (RefSeq) | 0.42 | Sama_1564 | | peptidyl-dipeptidase Dcp (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.46 | SO4091 | tldD | tldD protein (NCBI ptt file) | 0.39 | SO3142 | dcp-1 | peptidyl-dipeptidase Dcp (NCBI ptt file) | low | > 76 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.40 | BT2834 | | peptidyl-dipeptidase (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.33 | HMPREF1078_RS03620 | | TldD/PmbA family protein | 0.40 | HMPREF1078_RS08580 | | M3 family metallopeptidase | low | > 61 |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS03165 | | TldD/PmbA family protein | 0.41 | HMPREF1181_RS01125 | | M3 family metallopeptidase | low | > 56 |
Not shown: 5 genomes with orthologs for SMc00960 only; 9 genomes with orthologs for SMc04403 only