Conservation of cofitness between SMc04403 and SMc00406 in Sinorhizobium meliloti 1021

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc04403 peptidyl-dipeptidase A protein 1.0 SMc00406 4Fe-4S ferredoxin 0.26 5
Agrobacterium fabrum C58 0.80 Atu2664 peptidyl-dipeptidase 0.66 Atu0292 iron-sulfur cluster binding protein low > 89
Rhizobium sp. OAE497 0.79 ABIE40_RS18135 M3 family metallopeptidase 0.78 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG low > 107
Bosea sp. OAE506 0.56 ABIE41_RS12985 M3 family metallopeptidase 0.58 ABIE41_RS03135 tRNA epoxyqueuosine(34) reductase QueG low > 77
Phaeobacter inhibens DSM 17395 0.51 PGA1_c26590 peptidyl-dipeptidase Dcp 0.55 PGA1_c34310 Uncharacterized Fe-S protein low > 62
Rhodopseudomonas palustris CGA009 0.50 TX73_004495 M3 family metallopeptidase 0.63 TX73_000215 tRNA epoxyqueuosine(34) reductase QueG low > 86
Dinoroseobacter shibae DFL-12 0.46 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) 0.55 Dshi_3307 domain of unknown function DUF1730 (RefSeq) low > 64
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_1374 Zn-dependent oligopeptidases 0.35 B158DRAFT_0486 iron-sulfur cluster binding protein, putative low > 40
Shewanella loihica PV-4 0.43 Shew_2161 peptidyl-dipeptidase Dcp (RefSeq) 0.32 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.42 Shewana3_2492 peptidyl-dipeptidase Dcp (RefSeq) 0.32 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.42 Sama_1564 peptidyl-dipeptidase Dcp (RefSeq) 0.32 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) low > 62
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.55 CCNA_03753 iron-sulfur cluster-binding protein 0.58 55
Caulobacter crescentus NA1000 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.55 CCNA_03753 iron-sulfur cluster-binding protein low > 66
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS08580 M3 family metallopeptidase 0.25 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG low > 61
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2834 peptidyl-dipeptidase (NCBI ptt file) 0.27 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) low > 81
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2479 Zn-dependent oligopeptidases 0.51 Ga0059261_1058 epoxyqueuosine reductase low > 68
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_00370 M3 family peptidase 0.33 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG low > 52
Alteromonas macleodii MIT1002 0.39 MIT1002_00401 Peptidyl-dipeptidase dcp 0.34 MIT1002_03794 Epoxyqueuosine reductase low > 70
Shewanella oneidensis MR-1 0.39 SO3142 dcp-1 peptidyl-dipeptidase Dcp (NCBI ptt file) 0.32 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.38 ABIE51_RS09155 M3 family metallopeptidase 0.35 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS12525 M3 family metallopeptidase 0.57 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG low > 48
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS06270 M3 family metallopeptidase 0.32 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06015 M3 family metallopeptidase 0.32 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG low > 63
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS16390 peptidyl-dipeptidase Dcp 0.28 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_01885 peptidase M3 0.30 CA264_19810 epoxyqueuosine reductase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.301.1 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.36 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG low > 74
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS12690 peptidyl-dipeptidase Dcp 0.34 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG low > 74
Serratia liquefaciens MT49 0.36 IAI46_11800 peptidyl-dipeptidase Dcp 0.34 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_2572 Zn-dependent oligopeptidases 0.27 Echvi_0824 iron-sulfur cluster binding protein, putative low > 79
Rahnella sp. WP5 0.35 EX31_RS05310 peptidyl-dipeptidase Dcp 0.34 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02174 Dipeptidyl carboxypeptidase 0.33 OHPLBJKB_03876 Epoxyqueuosine reductase low > 73
Escherichia coli ECOR38 0.35 HEPCGN_26925 dcp peptidyl-dipeptidase Dcp 0.33 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG low > 85
Escherichia coli ECRC102 0.35 NIAGMN_25165 dcp peptidyl-dipeptidase Dcp 0.33 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.35 OKFHMN_01020 dcp peptidyl-dipeptidase Dcp 0.33 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC99 0.35 KEDOAH_27410 dcp peptidyl-dipeptidase Dcp 0.33 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC98 0.35 JDDGAC_03530 dcp peptidyl-dipeptidase Dcp 0.33 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.35 MCAODC_16905 dcp peptidyl-dipeptidase Dcp 0.33 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC62 0.35 BNILDI_17135 dcp peptidyl-dipeptidase Dcp 0.33 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECOR27 0.35 NOLOHH_18645 dcp peptidyl-dipeptidase Dcp 0.33 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli BL21 0.35 ECD_01497 dipeptidyl carboxypeptidase II 0.33 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis — —
Escherichia coli BW25113 0.35 b1538 dcp dipeptidyl carboxypeptidase II (NCBI) 0.33 b4166 yjeS predicted Fe-S electron transport protein (NCBI) low > 76
Escherichia fergusonii Becca 0.35 EFB2_02418 Dipeptidyl carboxypeptidase 0.33 EFB2_04369 Epoxyqueuosine reductase low > 86
Escherichia coli Nissle 1917 0.34 ECOLIN_RS08805 peptidyl-dipeptidase Dcp 0.33 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG — —
Enterobacter sp. TBS_079 0.34 MPMX20_02100 Dipeptidyl carboxypeptidase 0.32 MPMX20_00447 Epoxyqueuosine reductase low > 85
Enterobacter asburiae PDN3 0.34 EX28DRAFT_1449 Zn-dependent oligopeptidases 0.33 EX28DRAFT_3363 epoxyqueuosine reductase 0.58 27
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2498 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.33 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.37 44
Klebsiella michiganensis M5al 0.32 BWI76_RS15470 dipeptidyl carboxypeptidase II 0.34 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG low > 92
Pantoea sp. MT58 0.31 IAI47_09830 peptidyl-dipeptidase Dcp 0.34 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG low > 76
Pseudomonas stutzeri RCH2 0.28 Psest_4320 Zn-dependent oligopeptidases 0.35 Psest_0677 iron-sulfur cluster binding protein, putative low > 67
Pectobacterium carotovorum WPP14 0.27 HER17_RS21300 oligopeptidase A 0.35 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG low > 75
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_01010 oligopeptidase A 0.33 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG low > 62
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS00240 oligopeptidase A 0.35 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.35 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas fluorescens SBW25 0.27 PFLU_RS00240 oligopeptidase A 0.35 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.35 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas simiae WCS417 0.27 PS417_00245 oligopeptidase A 0.35 PS417_02460 epoxyqueuosine reductase low > 88
Dickeya dianthicola 67-19 0.27 HGI48_RS00045 oligopeptidase A 0.35 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG low > 71
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) 0.35 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG low > 87
Dickeya dadantii 3937 0.27 DDA3937_RS21265 oligopeptidase A 0.35 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG low > 74
Pseudomonas sp. RS175 0.27 PFR28_04699 Oligopeptidase A 0.34 PFR28_05115 Epoxyqueuosine reductase 0.24 80
Pseudomonas putida KT2440 0.27 PP_0096 oligopeptidase A 0.34 PP_4900 epoxyqueuosine reductase low > 96
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS07290 oligopeptidase A 0.35 HSERO_RS04220 epoxyqueuosine reductase low > 78
Marinobacter adhaerens HP15 0.27 HP15_3759 oligopeptidase A-like protein 0.37 HP15_2505 iron-sulfur cluster binding protein low > 73
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.35 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG low > 87
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) 0.34 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG low > 103
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_11120 oligopeptidase A 0.35 AO356_08685 epoxyqueuosine reductase low > 104
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_10775 oligopeptidase A 0.35 AO353_13115 epoxyqueuosine reductase low > 101
Pseudomonas sp. S08-1 0.26 OH686_12360 Oligopeptidase A 0.34 OH686_09500 epoxyqueuosine reductase low > 80
Paraburkholderia graminis OAS925 0.26 ABIE53_002798 oligopeptidase A 0.32 ABIE53_003363 epoxyqueuosine reductase 0.34 78
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS05695 M3 family metallopeptidase 0.32 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG low > 153
Dechlorosoma suillum PS 0.26 Dsui_0046 Zn-dependent oligopeptidase 0.35 Dsui_3502 iron-sulfur cluster binding protein, putative low > 51
Variovorax sp. OAS795 0.26 ABID97_RS14080 M3 family metallopeptidase 0.37 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG low > 91
Variovorax sp. SCN45 0.26 GFF963 Oligopeptidase A (EC 3.4.24.70) 0.34 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF4214 Oligopeptidase A (EC 3.4.24.70) 0.35 GFF5474 Epoxyqueuosine (oQ) reductase QueG low > 90
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS07340 oligopeptidase A 0.35 RR42_RS03405 epoxyqueuosine reductase low > 128
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS12875 oligopeptidase A 0.33 BPHYT_RS15960 iron-sulfur cluster binding protein low > 109
Acidovorax sp. GW101-3H11 0.25 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) 0.35 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG low > 79
Ralstonia solanacearum GMI1000 0.25 RS_RS08035 oligopeptidase A 0.34 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG low > 80
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS13490 M3 family metallopeptidase 0.35 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS15795 oligopeptidase A 0.33 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG low > 81
Ralstonia solanacearum UW163 0.25 UW163_RS15000 oligopeptidase A 0.34 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG — —
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS01690 oligopeptidase A 0.34 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG low > 76
Acinetobacter radioresistens SK82 0.24 MPMX26_02685 Oligopeptidase A 0.37 MPMX26_01783 Epoxyqueuosine reductase low > 36
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A 0.32 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Castellaniella sp019104865 MT123 0.23 ABCV34_RS04180 M3 family metallopeptidase 0.33 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG — —

Not shown: 7 genomes with orthologs for SMc04403 only; 4 genomes with orthologs for SMc00406 only