Conservation of cofitness between SMc03781 and SM_b21327 in Sinorhizobium meliloti 1021

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc03781 rRNA large subunit methyltransferase 1.0 SM_b21327 dTDP-4-dehydrorhamnose reductase 0.23 20
Rhizobium sp. OAE497 0.84 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 ABIE40_RS08665 dTDP-4-dehydrorhamnose reductase low > 107
Agrobacterium fabrum C58 0.83 Atu2776 hypothetical protein 0.47 Atu4616 dTDP-4-dehydrorhamnose reductase low > 89
Phaeobacter inhibens DSM 17395 0.50 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase 0.25 PGA1_65p00230 dTDP-4-dehydrorhamnose reductase RfbD — —
Dinoroseobacter shibae DFL-12 0.48 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.31 Dshi_4117 dTDP-4-dehydrorhamnose reductase (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.46 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 TX73_000615 dTDP-4-dehydrorhamnose reductase low > 86
Azospirillum sp. SherDot2 0.43 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.40 MPMX19_06726 dTDP-4-dehydrorhamnose reductase — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS04060 50S rRNA methyltransferase 0.33 AZOBR_RS33420 dTDP-4-dehydrorhamnose reductase low > 97
Magnetospirillum magneticum AMB-1 0.40 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 AMB_RS07440 dTDP-4-dehydrorhamnose reductase low > 64
Bosea sp. OAE506 0.40 ABIE41_RS07565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 ABIE41_RS02860 dTDP-4-dehydrorhamnose reductase low > 77
Rhodospirillum rubrum S1H 0.37 Rru_A1235 Protein of unknown function DUF163 (NCBI) 0.35 Rru_B0049 dTDP-4-dehydrorhamnose reductase (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_03546 rRNA large subunit methyltransferase 0.31 CCNA_01198 dTDP-4-dehydrorhamnose reductase 0.65 27
Caulobacter crescentus NA1000 0.37 CCNA_03546 rRNA large subunit methyltransferase 0.31 CCNA_01198 dTDP-4-dehydrorhamnose reductase low > 66
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS04710 50S rRNA methyltransferase 0.33 RR42_RS15835 dTDP-4-dehydrorhamnose reductase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 QEN71_RS25740 dTDP-4-dehydrorhamnose reductase — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 RALBFv3_RS12650 dTDP-4-dehydrorhamnose reductase — —
Ralstonia solanacearum UW163 0.34 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 UW163_RS00915 dTDP-4-dehydrorhamnose reductase — —
Ralstonia solanacearum GMI1000 0.34 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 RS_RS03435 dTDP-4-dehydrorhamnose reductase — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 RPSI07_RS20610 dTDP-4-dehydrorhamnose reductase — —
Paraburkholderia graminis OAS925 0.34 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.32 ABIE53_001140 dTDP-4-dehydrorhamnose reductase — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 ABZR87_RS08650 dTDP-4-dehydrorhamnose reductase low > 80
Castellaniella sp019104865 MT123 0.33 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 ABCV34_RS02405 dTDP-4-dehydrorhamnose reductase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.33 H281DRAFT_04825 dTDP-4-dehydrorhamnose reductase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 ABZR88_RS17490 dTDP-4-dehydrorhamnose reductase — —
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS17780 50S rRNA methyltransferase 0.33 HSERO_RS21855 dTDP-4-dehydrorhamnose reductase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.32 BPHYT_RS30985 dTDP-4-dehydrorhamnose reductase — —
Variovorax sp. SCN45 0.32 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.35 GFF6881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 CA265_RS19330 dTDP-4-dehydrorhamnose reductase low > 88
Variovorax sp. OAS795 0.31 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 ABID97_RS05665 dTDP-4-dehydrorhamnose reductase — —
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 HMPREF1181_RS05590 dTDP-4-dehydrorhamnose reductase — —
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 HMPREF1078_RS04150 dTDP-4-dehydrorhamnose reductase — —
Rhodanobacter denitrificans MT42 0.30 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LRK55_RS05435 dTDP-4-dehydrorhamnose reductase — —
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 LRK54_RS05680 dTDP-4-dehydrorhamnose reductase — —
Klebsiella michiganensis M5al 0.30 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 BWI76_RS19050 NAD(P)-dependent oxidoreductase low > 92
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 HMPREF1058_RS07940 dTDP-4-dehydrorhamnose reductase — —
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 OKGIIK_01160 rfbD dTDP-4-dehydrorhamnose reductase low > 52
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 ABZR86_RS18720 dTDP-4-dehydrorhamnose reductase low > 74
Bacteroides ovatus ATCC 8483 0.30 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH 0.32 BACOVA_04459 dTDP-4-dehydrorhamnose reductase — —
Bacteroides thetaiotaomicron VPI-5482 0.30 BT1562 conserved hypothetical protein (NCBI ptt file) 0.32 BT1730 putative dTDP-4-dehydrorhamnose reductase (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABI39_RS13375 dTDP-4-dehydrorhamnose reductase low > 72
Erwinia tracheiphila SCR3 0.29 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LU632_RS08855 rfbD dTDP-4-dehydrorhamnose reductase low > 74
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_0845 protein of unknown function DUF163 (RefSeq) 0.24 DvMF_0140 dTDP-4-dehydrorhamnose reductase (RefSeq) low > 51
Rahnella sp. WP5 0.29 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 EX31_RS11505 dTDP-4-dehydrorhamnose reductase — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.36 Ac3H11_1881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Desulfovibrio vulgaris Hildenborough JW710 0.28 DVU1254 conserved hypothetical protein (TIGR) 0.24 DVU1363 rfbD dTDP-4-dehydrorhamnose reductase (TIGR) low > 55
Pseudomonas sp. S08-1 0.28 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.38 OH686_14365 dTDP-4-dehydrorhamnose reductase — —
Lysobacter sp. OAE881 0.28 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 ABIE51_RS15605 dTDP-4-dehydrorhamnose reductase — —
Dechlorosoma suillum PS 0.28 Dsui_0451 hypothetical protein 0.33 Dsui_1949 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas simiae WCS417 0.28 PS417_24730 50S rRNA methyltransferase 0.38 PS417_01315 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.34 GFF3888 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) low > 78
Pseudomonas sp. RS175 0.28 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.35 PFR28_04891 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas stutzeri RCH2 0.28 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.37 Psest_1006 dTDP-4-dehydrorhamnose reductase low > 67
Pseudomonas putida KT2440 0.27 PP_4808 23S rRNA m3psi1915 methyltransferase 0.30 PP_1784 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_4366 Protein of unknown function DUF163 0.32 Psyr_0925 dTDP-4-dehydrorhamnose reductase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.32 GFF1838 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Escherichia coli BL21 0.27 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.34 ECD_01946 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit — —
Escherichia coli BW25113 0.27 b0636 ybeA hypothetical protein (NCBI) 0.35 b2040 rfbD dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.34 OHPLBJKB_01662 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_4366 Protein of unknown function DUF163 0.32 Psyr_0925 dTDP-4-dehydrorhamnose reductase — —
Dickeya dianthicola 67-19 0.27 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 HGI48_RS06770 dTDP-4-dehydrorhamnose reductase — —
Dickeya dianthicola ME23 0.27 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 DZA65_RS07125 dTDP-4-dehydrorhamnose reductase low > 75
Dickeya dadantii 3937 0.27 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 DDA3937_RS06750 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_06480 50S rRNA methyltransferase 0.37 AO353_11870 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.33 Pf1N1B4_342 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Escherichia fergusonii Becca 0.27 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.34 EFB2_01814 dTDP-4-dehydrorhamnose reductase — —
Escherichia coli ECOR38 0.27 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 HEPCGN_03110 rfbD dTDP-4-dehydrorhamnose reductase — —
Alteromonas macleodii MIT1002 0.27 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.27 MIT1002_03558 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_15305 50S rRNA methyltransferase 0.39 AO356_10055 dTDP-4-dehydrorhamnose reductase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.40 PfGW456L13_2198 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.37 Pf6N2E2_3881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Fusobacterium nucleatum SB010 0.26 HUW76_07715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 HUW76_01315 dTDP-4-dehydrorhamnose reductase low > 35
Shewanella amazonensis SB2B 0.25 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.30 Sama_2239 dTDP-4-dehydrorhamnose reductase (RefSeq) — —
Shewanella loihica PV-4 0.25 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.35 Shew_1403 dTDP-4-dehydrorhamnose reductase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.25 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.24 SO1653 rfbD dTDP-4-dehydrorhamnose reductase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.25 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.36 Shewana3_1381 dTDP-4-dehydrorhamnose reductase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.30 Xcc-8004.4483.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) — —
Acinetobacter radioresistens SK82 0.23 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.35 MPMX26_00451 dTDP-4-dehydrorhamnose reductase 0.58 15

Not shown: 21 genomes with orthologs for SMc03781 only; 3 genomes with orthologs for SM_b21327 only