Conservation of cofitness between Psyr_0580 and Psyr_4683 in Pseudomonas syringae pv. syringae B728a

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase 1.0 Psyr_4683 dethiobiotin synthase 0.38 4
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase 1.00 Psyr_4683 dethiobiotin synthase low > 86
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_143 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.81 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) low > 87
Pseudomonas sp. RS175 0.92 PFR28_05131 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 0.79 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1
Pseudomonas sp. SVBP6 0.92 COO64_RS17960 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.77 COO64_RS22705 bioD dethiobiotin synthase low > 93
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_13205 23S rRNA methyltransferase 0.81 AO353_07505 dethiobiotin synthetase low > 101
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_08605 23S rRNA methyltransferase 0.80 AO356_14155 dethiobiotin synthetase low > 104
Pseudomonas sp. DMC3 0.91 GFF3230 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.80 GFF72 ATP-dependent dethiobiotin synthetase BioD 1 low > 89
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3606 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.80 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) low > 103
Pseudomonas segetis P6 0.91 MPMX49_04144 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.74 MPMX49_00763 ATP-dependent dethiobiotin synthetase BioD 1 0.38 67
Pseudomonas simiae WCS417 0.90 PS417_02560 23S rRNA methyltransferase 0.83 PS417_25985 dethiobiotin synthetase low > 88
Pseudomonas lactucae CFBP13502 0.90 GEMAOFIL_00748 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 0.81 GEMAOFIL_05318 ATP-dependent dethiobiotin synthetase BioD 1 0.60 22
Pseudomonas fluorescens SBW25 0.90 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.82 PFLU_RS27630 dethiobiotin synthase 0.50 18
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.82 PFLU_RS27630 dethiobiotin synthase low > 109
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1402 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.80 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) low > 87
Pseudomonas orientalis W4I3 0.89 QF045_RS05610 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.81 QF045_RS00395 dethiobiotin synthase low > 93
Pseudomonas stutzeri RCH2 0.89 Psest_0692 rRNA methylase, putative, group 3 0.65 Psest_0415 dethiobiotin synthase low > 67
Pseudomonas sp. BP01 0.86 JOY50_RS17325 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.73 JOY50_RS17950 bioD dethiobiotin synthase low > 84
Pseudomonas putida KT2440 0.86 PP_4879 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.72 PP_0366 dethiobiotin synthetase low > 96
Pseudomonas aeruginosa PA14 0.83 IKLFDK_28870 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.64 IKLFDK_22915 dethiobiotin synthase
Pseudomonas sp. S08-1 0.83 OH686_15915 23S rRNA (guanosine(2251)-2'-O)-methyltransferase 0.72 OH686_10335 dethiobiotin synthase low > 80
Pseudomonas aeruginosa MRSN321 0.83 DY961_RS10460 rlmB;go_function=RNA 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.64 DY961_RS22525 bioD;go_function=dethiobiotin dethiobiotin synthase
Pseudomonas aeruginosa PUPa3 0.82 DQ20_RS51595 rlmB;go_function=RNA 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.64 DQ20_RS36805 bioD;go_function=dethiobiotin dethiobiotin synthase
Alteromonas macleodii MIT1002 0.60 MIT1002_03605 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.41 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 low > 70
Marinobacter adhaerens HP15 0.59 HP15_623 RNA methyltransferase, TrmH family, group 3 0.49 HP15_2482 dethiobiotin synthetase low > 73
Shewanella sp. ANA-3 0.59 Shewana3_0698 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) 0.53 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq)
Shewanella oneidensis MR-1 0.58 SO3934 RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) 0.52 SO2737 bioD dethiobiotin synthase (NCBI ptt file)
Pantoea sp. MT58 0.58 IAI47_02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.46 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD low > 76
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS11225 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.46 PagCFBP13505_RS03785 ATP-dependent dethiobiotin synthetase BioD low > 74
Shewanella amazonensis SB2B 0.58 Sama_3066 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) 0.44 Sama_1441 bioD dithiobiotin synthetase (RefSeq)
Dickeya dadantii 3937 0.57 DDA3937_RS17255 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.48 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD low > 74
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1990 23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185) 0.40 B158DRAFT_0869 dethiobiotin synthase
Pectobacterium carotovorum WPP14 0.57 HER17_RS03840 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.48 HER17_RS13445 dethiobiotin synthase low > 75
Klebsiella pneumoniae MKP103 0.57 KDGMDA_11080 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.45 KDGMDA_17040 dethiobiotin synthase low > 95
Dickeya dianthicola 67-19 0.57 HGI48_RS17310 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.49 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD
Shewanella loihica PV-4 0.57 Shew_3288 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) 0.55 Shew_1722 dethiobiotin synthase (RefSeq)
Erwinia amylovora T8 0.57 OLJFJH_02465 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.41 OLJFJH_16745 dethiobiotin synthase low > 58
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13150 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.38 CSW01_05660 dethiobiotin synthase low > 62
Serratia liquefaciens MT49 0.56 IAI46_01665 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.48 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD low > 87
Dickeya dianthicola ME23 0.56 DZA65_RS18400 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.49 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD low > 75
Escherichia coli ECRC99 0.56 KEDOAH_15940 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.47 KEDOAH_21525 bioD dethiobiotin synthase
Escherichia coli BL21 0.56 ECD_04047 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent 0.47 ECD_00745 dethiobiotin synthetase low > 61
Escherichia coli BW25113 0.56 b4180 rlmB 23S rRNA (Gm2251)-methyltransferase (NCBI) 0.46 b0778 bioD dethiobiotin synthetase (NCBI) low > 76
Escherichia coli ECRC102 0.56 NIAGMN_10065 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.47 NIAGMN_04430 bioD dethiobiotin synthase low > 80
Escherichia coli ECOR27 0.56 NOLOHH_04480 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.46 NOLOHH_22755 bioD dethiobiotin synthase low > 76
Escherichia coli Nissle 1917 0.56 ECOLIN_RS24270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.46 ECOLIN_RS04145 dethiobiotin synthase
Escherichia coli ECRC62 0.56 BNILDI_07010 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.45 BNILDI_21025 bioD dethiobiotin synthase low > 75
Escherichia coli ECRC101 0.56 MCAODC_02730 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.47 MCAODC_25600 bioD dethiobiotin synthase low > 87
Escherichia fergusonii Becca 0.56 EFB2_04355 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.46 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 low > 86
Escherichia coli ECRC100 0.56 OKFHMN_12215 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.47 OKFHMN_06385 bioD dethiobiotin synthase low > 79
Escherichia coli ECRC98 0.56 JDDGAC_15855 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.47 JDDGAC_10020 bioD dethiobiotin synthase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_03862 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 0.47 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 low > 74
Escherichia coli ECOR38 0.56 HEPCGN_10445 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.46 HEPCGN_01655 bioD dethiobiotin synthase low > 88
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_13235 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.43 IJEDHG_19580 bioD dethiobiotin synthase
Erwinia tracheiphila SCR3 0.56 LU632_RS21745 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.44 LU632_RS09145 bioD dethiobiotin synthase
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3377 rRNA methylase, putative, group 3 0.47 EX28DRAFT_2213 dethiobiotin synthase low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_00461 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.47 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 low > 85
Rahnella sp. WP5 0.55 EX31_RS08780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.44 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF833 '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 0.41 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) low > 78
Klebsiella michiganensis M5al 0.55 BWI76_RS02580 23S rRNA (guanosine(2251)-2'-O)-methyltransferase 0.44 BWI76_RS08775 dethiobiotin synthase low > 92
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10990 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.35 ABZR87_RS12345 dethiobiotin synthase low > 80
Ralstonia solanacearum UW163 0.53 UW163_RS12815 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.35 UW163_RS14160 dethiobiotin synthase
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS15350 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.35 RALBFv3_RS00825 dethiobiotin synthase
Ralstonia solanacearum GMI1000 0.53 RS_RS06160 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.34 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD
Ralstonia solanacearum PSI07 0.52 RPSI07_RS18025 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.35 RPSI07_RS16695 dethiobiotin synthase low > 81
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS13060 23S rRNA methyltransferase 0.27 RR42_RS00935 dethiobiotin synthetase
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS09295 23S rRNA (guanosine-2'-O-)-methyltransferase 0.36 HSERO_RS12255 dethiobiotin synthetase low > 78
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22920 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.29 QEN71_RS01090 dethiobiotin synthase
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS08460 23S rRNA (guanosine-2'-O-)-methyltransferase 0.37 BPHYT_RS02155 dithiobiotin synthetase
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_00713 23S rRNA Gm-2251 2'-O-methyltransferase 0.35 H281DRAFT_02096 dethiobiotin synthetase low > 103
Paraburkholderia graminis OAS925 0.48 ABIE53_001941 23S rRNA (guanosine2251-2'-O)-methyltransferase 0.37 ABIE53_000578 dethiobiotin synthetase low > 113
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS08265 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.44 ABZR86_RS12700 dethiobiotin synthase low > 74
Rhodanobacter denitrificans MT42 0.47 LRK55_RS00230 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.41 LRK55_RS06915 dethiobiotin synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS00490 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.42 LRK54_RS07180 dethiobiotin synthase low > 59
Variovorax sp. OAS795 0.46 ABID97_RS14320 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.36 ABID97_RS16255 dethiobiotin synthase
Methylophilus sp. DMC18 0.46 GFF636 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.32 GFF1686 ATP-dependent dethiobiotin synthetase BioD 1
Dechlorosoma suillum PS 0.46 Dsui_1899 rRNA methylase, putative, group 3 0.41 Dsui_2884 dethiobiotin synthase low > 51
Acidovorax sp. GW101-3H11 0.46 Ac3H11_4141 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) low > 79
Variovorax sp. SCN45 0.45 GFF1018 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) low > 127
Rhodanobacter sp000427505 FW510-R12 0.45 LRK53_RS09660 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.42 LRK53_RS01195 dethiobiotin synthase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF4838 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.40 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3)
Castellaniella sp019104865 MT123 0.45 ABCV34_RS06630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.16 ABCV34_RS15285 dethiobiotin synthase low > 48
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_06760 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.42 OKGIIK_16455 bioD dethiobiotin synthase low > 53
Lysobacter sp. OAE881 0.44 ABIE51_RS07480 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.43 ABIE51_RS17990 dethiobiotin synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.3368.1 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) 0.34 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) low > 74
Rhodopseudomonas palustris CGA009 0.27 TX73_017390 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.13 TX73_015410 dethiobiotin synthase low > 86
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS08890 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.17 CA265_RS09760 dethiobiotin synthase low > 88
Cellulophaga baltica 18 0.26 M666_RS01065 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.15 M666_RS03375 dethiobiotin synthase
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1814 rRNA methylase, putative, group 3 0.15 Ga0059261_3673 dethiobiotin synthase low > 68
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_20095 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.14 CA264_02415 dethiobiotin synthase low > 74
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09200 putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 0.16 PGA1_c09140 dethiobiotin synthetase BioD low > 62
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS18220 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.19 HMPREF1058_RS17975 ATP-dependent dethiobiotin synthetase BioD low > 67
Sphingobium sp. HT1-2 0.24 GFF419 '23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185)' transl_table=11 0.17 GFF3209 Dethiobiotin synthase BioD (EC 6.3.3.3) low > 95

Not shown: 14 genomes with orthologs for Psyr_0580 only; 7 genomes with orthologs for Psyr_4683 only