| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1974 | | Excinuclease ABC subunit B | 1.0 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | 0.29 | 18 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1974 | | Excinuclease ABC subunit B | 1.00 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | 0.57 | 11 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.84 | Pf6N2E2_5069 | | putative Cytochrome bd2, subunit II | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_21335 | | excinuclease ABC subunit B | 0.84 | AO356_15645 | | ubiquinol oxidase subunit II | low | > 104 |
| Pseudomonas simiae WCS417 | 0.96 | PS417_18685 | | excinuclease ABC subunit B | 0.89 | PS417_24345 | | ubiquinol oxidase subunit II | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.89 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.89 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | low | > 109 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_02837 | | UvrABC system protein B | 0.84 | PFR28_03800 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_20545 | | excinuclease ABC subunit B | 0.89 | AO353_13945 | | ubiquinol oxidase subunit II | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.95 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.90 | Pf1N1B4_2761 | | putative Cytochrome bd2, subunit II | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.94 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.89 | PfGW456L13_1436 | | putative Cytochrome bd2, subunit II | low | > 87 |
| Pseudomonas putida KT2440 | 0.91 | PP_1974 | | excinuclease UvrABC protein B | 0.85 | PP_4650 | | Ubiquinol oxidase subunit II, cyanide insensitive | — | — |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_1296 | | excinuclease ABC, B subunit | 0.80 | Psest_2558 | | cytochrome d oxidase, subunit II (cydB) | low | > 67 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_04580 | | excinuclease ABC subunit B | 0.79 | OH686_01510 | | cytochrome d ubiquinol oxidase, subunit II | low | > 80 |
| Marinobacter adhaerens HP15 | 0.76 | HP15_1372 | | excinuclease ABC subunit B | 0.50 | HP15_1747 | | cytochrome d ubiquinol oxidase, subunit II | low | > 73 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_06550 | | excinuclease ABC subunit B | 0.66 | IAI46_15415 | | cytochrome d ubiquinol oxidase subunit II | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS13420 | | excinuclease ABC subunit B | 0.22 | HER17_RS14900 | | cytochrome d ubiquinol oxidase subunit II | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.31 | CSW01_07875 | | cytochrome BD ubiquinol oxidase subunit II | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.54 | B158DRAFT_1248 | | cytochrome d oxidase, subunit II (cydB) | low | > 40 |
| Rahnella sp. WP5 | 0.72 | EX31_RS23720 | | excinuclease ABC subunit B | 0.74 | EX31_RS02010 | | cytochrome d ubiquinol oxidase subunit II | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.52 | Xcc-8004.4674.1 | | putative Cytochrome bd2, subunit II | low | > 74 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.22 | DZA65_RS06875 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.20 | LU632_RS16060 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Dickeya dadantii 3937 | 0.72 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.68 | DDA3937_RS08550 | | cytochrome d ubiquinol oxidase subunit II | low | > 74 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.22 | HGI48_RS06525 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Shewanella loihica PV-4 | 0.71 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.20 | Shew_1303 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.71 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.23 | SO3285 | cydB | cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.67 | Shewana3_0927 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | low | > 73 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.66 | EX28DRAFT_1022 | | cytochrome d oxidase, subunit II (cydB) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_01408 | | UvrABC system protein B | 0.66 | MPMX20_02428 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 85 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.69 | BWI76_RS14255 | | terminal oxidase subunit II | low | > 92 |
| Pantoea sp. MT58 | 0.71 | IAI47_13505 | | excinuclease ABC subunit B | 0.74 | IAI47_03475 | | cytochrome d ubiquinol oxidase subunit II | low | > 76 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.21 | ECOLIN_RS05145 | | cytochrome d ubiquinol oxidase subunit II | low | > 55 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.22 | NIAGMN_23075 | appB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli BW25113 | 0.71 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.21 | b0979 | appB | cytochrome bd-II oxidase, subunit II (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.22 | OKFHMN_04775 | appB | cytochrome d ubiquinol oxidase subunit II | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_02934 | | UvrABC system protein B | 0.21 | OHPLBJKB_02687 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 73 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.22 | KEDOAH_22970 | appB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli ECRC101 | 0.71 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.22 | MCAODC_24160 | appB | cytochrome d ubiquinol oxidase subunit II | low | > 87 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.21 | NOLOHH_21680 | appB | cytochrome d ubiquinol oxidase subunit II | low | > 75 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.21 | BNILDI_19845 | appB | cytochrome d ubiquinol oxidase subunit II | low | > 75 |
| Escherichia coli BL21 | 0.71 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.21 | ECD_00982 | | cytochrome bd-II oxidase, subunit II | low | > 61 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.22 | JDDGAC_08385 | appB | cytochrome d ubiquinol oxidase subunit II | low | > 86 |
| Escherichia fergusonii Becca | 0.70 | EFB2_03326 | | UvrABC system protein B | 0.21 | EFB2_03092 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | low | > 86 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.21 | HEPCGN_01430 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Lysobacter sp. OAE881 | 0.70 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.53 | ABIE51_RS02045 | | cytochrome d ubiquinol oxidase subunit II | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.16 | ABZR86_RS11960 | | cytochrome d ubiquinol oxidase subunit II | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF675 | | Excinuclease ABC subunit B | 0.65 | GFF4255 | | putative Cytochrome bd2, subunit II | low | > 78 |
| Shewanella amazonensis SB2B | 0.70 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.22 | Sama_2348 | | cytochrome bd-I oxidase subunit II (RefSeq) | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.19 | LRK54_RS11705 | | cytochrome d ubiquinol oxidase subunit II | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.19 | LRK55_RS11430 | | cytochrome d ubiquinol oxidase subunit II | low | > 63 |
| Dechlorosoma suillum PS | 0.69 | Dsui_2434 | | excinuclease ABC, B subunit | 0.21 | Dsui_1916 | | cytochrome d oxidase cyd, subunit II | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05995 | | excinuclease ABC subunit B | 0.74 | RR42_RS28280 | | ubiquinol oxidase subunit II | low | > 128 |
| Alteromonas macleodii MIT1002 | 0.69 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.27 | MIT1002_03622 | | Cytochrome d ubiquinol oxidase subunit 2 | low | > 70 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.17 | OKGIIK_12190 | cydB | cytochrome d ubiquinol oxidase subunit II | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02142 | | UvrABC system protein B | 0.58 | MPMX26_01455 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.69 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.34 | ABZR87_RS18835 | | cytochrome d ubiquinol oxidase subunit II | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.52 | RPSI07_RS05550 | | cytochrome d ubiquinol oxidase subunit II | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.53 | RALBFv3_RS18085 | | cytochrome d ubiquinol oxidase subunit II | low | > 76 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.52 | UW163_RS21045 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS05005 | | UvrABC system protein B | 0.52 | RS_RS22955 | | cytochrome d ubiquinol oxidase subunit II | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.67 | ABIE53_001645 | | excinuclease ABC subunit B | 0.54 | ABIE53_006517 | | cytochrome d ubiquinol oxidase subunit II | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.57 | H281DRAFT_06433 | | cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.58 | BPHYT_RS30685 | | ubiquinol oxidase subunit II, cyanide insensitive | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.66 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.18 | ABCV34_RS14395 | | cytochrome d ubiquinol oxidase subunit II | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.66 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.56 | QEN71_RS07820 | | cytochrome d ubiquinol oxidase subunit II | low | > 153 |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.20 | HSERO_RS15345 | | cytochrome BD oxidase subunit II | low | > 78 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.72 | ABID97_RS28655 | | cytochrome d ubiquinol oxidase subunit II | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4962 | | Excinuclease ABC subunit B | 0.31 | GFF216 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 90 |
| Variovorax sp. SCN45 | 0.65 | GFF945 | | Excinuclease ABC subunit B | 0.22 | GFF2652 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 127 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.20 | CCNA_00801 | | cytochrome bd-type quinol oxidase, subunit 2 cydB | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.20 | CCNA_00801 | | cytochrome bd-type quinol oxidase, subunit 2 cydB | low | > 67 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.58 | MPMX19_05025 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.36 | Dshi_2689 | | cytochrome bd ubiquinol oxidase subunit II (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.51 | A4249_RS11600 | | cytochrome d ubiquinol oxidase subunit II | low | > 48 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.59 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.22 | DVU3270 | cydB | cytochrome d ubiquinol oxidase, subunit II (TIGR) | low | > 55 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c26160 | | uvrABC system protein B | 0.51 | PGA1_c19660 | | cytochrome d ubiquinol oxidase subunit 2 | low | > 62 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.44 | Rru_A0561 | | Cytochrome bd ubiquinol oxidase, subunit II (NCBI) | low | > 58 |
| Synechococcus elongatus PCC 7942 | 0.59 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.37 | Synpcc7942_1766 | cydB | cytochrome d ubiquinol oxidase, subunit II | low | > 38 |
| Desulfovibrio vulgaris Miyazaki F | 0.59 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | 0.17 | DvMF_2472 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | low | > 51 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.51 | Ga0059261_3866 | | cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) | low | > 68 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.55 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.27 | ABZR88_RS22225 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Mycobacterium tuberculosis H37Rv | 0.54 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.20 | Rv1622c | | Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) CydB (cytochrome BD-I oxidase subunit II) | — | — |
Not shown: 16 genomes with orthologs for Psyr_1974 only; 5 genomes with orthologs for Psyr_4281 only