Conservation of cofitness between Psyr_0003 and Psyr_4197 in Pseudomonas syringae pv. syringae B728a

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_4197 DNA replication and repair protein RecN 0.45 8
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.88 AO353_05660 DNA repair protein RecN 0.41 33
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.88 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.89 Pf1N1B4_1178 DNA repair protein RecN 0.48 13
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.88 PFLU_RS25910 DNA repair protein RecN 0.28 11
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.85 AO356_07510 DNA repair protein RecN 0.69 6
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.88 QF045_RS26325 DNA repair protein RecN low > 93
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.87 GFF4971 DNA repair protein RecN low > 89
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.88 GEMAOFIL_04964 DNA repair protein RecN low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.84 COO64_RS15270 recN DNA repair protein RecN low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.85 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.88 Pf6N2E2_3370 DNA repair protein RecN 0.77 2
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.89 PfGW456L13_5106 DNA repair protein RecN 0.23 54
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.80 JOY50_RS26735 recN DNA repair protein RecN low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.88 PS417_24070 recombination and repair protein 0.45 4
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.80 PP_4729 factor used in recombination and DNA repair low > 96
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.82 MPMX49_01181 DNA repair protein RecN low > 75
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.81 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.79 IKLFDK_29775 DNA repair protein RecN 0.60 15
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.77 Psest_0962 DNA repair protein RecN 0.74 6
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.43 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.49 9
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.43 Shewana3_1104 recombination and repair protein (RefSeq) 0.76 8
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.44 Sama_1026 recombination and repair protein (RefSeq) 0.77 5
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.43 Shew_1196 recombination and repair protein (RefSeq) 0.63 19
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.40 HER17_RS17420 DNA repair protein RecN low > 75
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.43 IAI46_19635 DNA repair protein RecN 0.41 51
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.42 DDA3937_RS04325 DNA repair protein RecN low > 74
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.40 HGI48_RS04320 DNA repair protein RecN low > 71
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.41 DZA65_RS04235 DNA repair protein RecN low > 75
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.41 EX31_RS21760 DNA repair protein RecN low > 89
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.40 b2616 recN recombination and repair protein (NCBI) 0.55 10
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.40 ECD_02504 recombination and repair protein low > 61
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.40 MCAODC_11670 recN DNA repair protein RecN low > 87
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.40 NOLOHH_12815 recN DNA repair protein RecN low > 76
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.40 ECOLIN_RS14775 DNA repair protein RecN low > 55
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.40 BNILDI_11620 recN DNA repair protein RecN low > 75
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.40 JDDGAC_24810 recN DNA repair protein RecN low > 87
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.40 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.40 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.40 NIAGMN_18915 recN DNA repair protein RecN low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.40 OHPLBJKB_01091 DNA repair protein RecN low > 74
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.40 HEPCGN_20265 recN DNA repair protein RecN low > 88
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.40 OKFHMN_21145 recN DNA repair protein RecN low > 79
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.39 EX28DRAFT_2719 DNA repair protein RecN low > 76
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.43 CSW01_04395 DNA repair protein RecN low > 62
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.40 KDGMDA_02250 DNA repair protein RecN low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.40 GFF4162 DNA repair protein RecN 0.50 75
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.39 MPMX20_03486 DNA repair protein RecN low > 85
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.41 IAI47_04810 DNA repair protein RecN low > 76
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.41 BWI76_RS21560 DNA repair protein RecN low > 92
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.50 HP15_3084 DNA repair protein RecN 0.59 2
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.38 LU632_RS16985 recN DNA repair protein RecN low > 73
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.40 OLJFJH_10175 DNA repair protein RecN low > 58
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.41 PagCFBP13505_RS14700 DNA repair protein RecN low > 74
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.39 IJEDHG_26925 recN DNA repair protein RecN low > 61
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.40 MIT1002_01443 Recombination protein N low > 70
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.41 B158DRAFT_0601 DNA replication and repair protein RecN 0.61 9
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.31 MPMX26_00239 DNA repair protein RecN low > 36
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.31 RR41_RS17380 DNA repair protein RecN low > 55
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.37 LRK54_RS17960 DNA repair protein RecN 0.39 5
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.37 LRK55_RS17815 DNA repair protein RecN low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.39 OKGIIK_07340 recN DNA repair protein RecN low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.37 LRK53_RS11400 DNA repair protein RecN low > 59
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.38 ABZR86_RS05665 DNA repair protein RecN 0.64 12
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.37 ABIE51_RS11655 DNA repair protein RecN low > 62
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.39 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.28 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1156 recF protein 0.27 Echvi_2067 DNA repair protein RecN 0.72 15
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.24 HUW76_08055 DNA repair protein RecN — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.29 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05088 DNA replication and repair protein RecF 0.29 BACOVA_00200 DNA repair protein RecN low > 96
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.26 CA265_RS14855 DNA repair protein RecN 0.81 10
Bacteroides thetaiotaomicron VPI-5482 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.29 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.27 HMPREF1058_RS18225 DNA repair protein RecN 0.58 24
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.29 Atu2083 DNA repair protein RecN 0.47 11
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS13135 DNA replication and repair protein RecF 0.27 ABI39_RS14500 DNA repair protein RecN low > 72
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.23 M666_RS17655 DNA repair protein RecN 0.50 61
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.28 MPMX19_01601 DNA repair protein RecN — —
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.27 ABIE41_RS12645 DNA repair protein RecN 0.65 5
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.27 ABZR88_RS06580 DNA repair protein RecN low > 71
Sinorhizobium meliloti 1021 0.15 SMc02863 recombination protein F 0.30 SMc01877 DNA repair protein 0.67 8
Bifidobacterium breve UCC2003 0.14 BBR_RS10265 DNA replication and repair protein RecF 0.14 BBR_RS14030 DNA repair protein RecN low > 34
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_2727 DNA replication and repair protein RecF 0.26 Ga0059261_1026 DNA repair protein RecN — —
Sphingobium sp. HT1-2 0.13 GFF730 DNA recombination and repair protein RecF 0.27 GFF2340 DNA repair protein RecN low > 95
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.27 AZOBR_RS12395 DNA repair protein RecN — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_17475 DNA replication and repair protein RecF 0.27 CA264_13235 DNA repair protein RecN 0.65 7
Magnetospirillum magneticum AMB-1 0.12 AMB_RS03285 DNA replication and repair protein RecF 0.29 AMB_RS19520 DNA repair protein RecN — —
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.27 TX73_018240 DNA repair protein RecN 0.32 37
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.26 GFF2252 DNA repair protein RecN — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.25 Dshi_2413 DNA repair protein RecN (RefSeq) 0.41 22
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.26 PGA1_c09720 DNA repair protein RecN 0.43 17
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.23 CCNA_02062 DNA repair protein recN low > 67
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.23 CCNA_02062 DNA repair protein recN 0.83 7
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.25 Rru_A0940 DNA repair protein RecN (NCBI) — —
Synechocystis sp000284455 PCC 6803 0.10 SGL_RS07025 DNA replication/repair protein RecF 0.19 SGL_RS11690 DNA repair protein RecN — —
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.22 A4249_RS02620 DNA repair protein RecN low > 48
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_2250 recF recombination protein F 0.22 Synpcc7942_1779 recN DNA repair protein RecN low > 38

Not shown: 1 genomes with orthologs for Psyr_0003 only; 21 genomes with orthologs for Psyr_4197 only