Conservation of cofitness between Psyr_0726 and Psyr_0453 in Pseudomonas syringae pv. syringae B728a

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0726 ribosomal large subunit pseudouridine synthase D 1.0 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.48 13
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0726 ribosomal large subunit pseudouridine synthase D 1.00 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_14220 ribosomal large subunit pseudouridine synthase D 0.86 AO353_08050 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_15925 ribosomal large subunit pseudouridine synthase D 0.85 AO356_13565 16S rRNA methyltransferase 0.38 18
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.85 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.27 43
Pseudomonas fluorescens SBW25 0.96 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.85 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas simiae WCS417 0.96 PS417_03820 ribosomal large subunit pseudouridine synthase D 0.86 PS417_26545 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.85 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.85 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.82 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas sp. RS175 0.92 PFR28_03748 Ribosomal large subunit pseudouridine synthase D 0.85 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.29 44
Pseudomonas putida KT2440 0.86 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase 0.83 PP_4985 16S rRNA m3U1498 methyltransferase — —
Pseudomonas stutzeri RCH2 0.86 Psest_0709 pseudouridine synthase, RluA family 0.76 Psest_0305 RNA methyltransferase, RsmE family 0.30 12
Pseudomonas sp. S08-1 0.83 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase 0.83 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Marinobacter adhaerens HP15 0.60 HP15_527 pseudouridine synthase, RluA family 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E low > 73
Dickeya dianthicola ME23 0.58 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.44 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.43 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Dickeya dadantii 3937 0.58 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.43 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Erwinia tracheiphila SCR3 0.57 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.44 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 50
Rahnella sp. WP5 0.57 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.42 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Pectobacterium carotovorum WPP14 0.56 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.44 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Shewanella sp. ANA-3 0.56 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) 0.40 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 73
Serratia liquefaciens MT49 0.56 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.42 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Shewanella amazonensis SB2B 0.55 Sama_2605 pseudouridylate synthase (RefSeq) 0.42 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) — —
Shewanella loihica PV-4 0.55 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.39 Shew_3224 hypothetical protein (RefSeq) 0.57 16
Escherichia coli ECOR38 0.55 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.41 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Escherichia coli ECRC100 0.55 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli ECRC102 0.55 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia fergusonii Becca 0.55 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.41 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli ECRC98 0.55 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Pantoea sp. MT58 0.55 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.42 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.36 73
Escherichia coli ECRC99 0.55 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli ECRC101 0.55 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 55
Escherichia coli ECOR27 0.55 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D 0.41 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.42 65
Escherichia coli BW25113 0.55 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) 0.41 b2946 yggJ orf, hypothetical protein (VIMSS) — —
Escherichia coli BL21 0.55 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase 0.41 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.78 6
Escherichia coli ECRC62 0.55 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.41 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Alteromonas macleodii MIT1002 0.55 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D 0.44 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E low > 70
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific 0.42 B158DRAFT_0180 RNA methyltransferase, RsmE family low > 40
Enterobacter sp. TBS_079 0.54 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D 0.40 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.40 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76
Klebsiella michiganensis M5al 0.53 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase 0.40 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.42 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.36 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Lysobacter sp. OAE881 0.51 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.36 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Rhodanobacter denitrificans MT42 0.49 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.39 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.39 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.77 3
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.39 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 19
Rhodanobacter sp. FW510-T8 0.48 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.38 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 52
Acinetobacter radioresistens SK82 0.45 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D 0.40 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E low > 36
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS13315 RluA family pseudouridine synthase 0.36 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Ralstonia solanacearum PSI07 0.43 RPSI07_RS15970 RluA family pseudouridine synthase 0.33 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 81
Ralstonia solanacearum GMI1000 0.43 RS_RS08205 RluA family pseudouridine synthase 0.35 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Ralstonia solanacearum UW163 0.42 UW163_RS14830 RluA family pseudouridine synthase 0.35 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS01520 RluA family pseudouridine synthase 0.35 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D 0.34 HSERO_RS07110 16S rRNA methyltransferase low > 78
Rhizobium sp. OAE497 0.38 ABIE40_RS14790 RluA family pseudouridine synthase 0.19 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.70 3
Rhodopseudomonas palustris CGA009 0.36 TX73_001905 RluA family pseudouridine synthase 0.16 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_0664 pseudouridine synthase, RluA family 0.21 Ga0059261_0807 RNA methyltransferase, RsmE family low > 68
Azospirillum sp. SherDot2 0.36 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D 0.21 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E low > 112
Castellaniella sp019104865 MT123 0.35 ABCV34_RS01885 RluA family pseudouridine synthase 0.29 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.92 40
Sinorhizobium meliloti 1021 0.34 SMc00647 ribosomal large subunit pseudouridine synthase 0.18 SMc00826 16S ribosomal RNA methyltransferase RsmE low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.32 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 90
Phaeobacter inhibens DSM 17395 0.34 PGA1_c09000 ribosomal large subunit pseudouridine synthase D 0.20 PGA1_c02950 RNA methyltransferase-like protein low > 62
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS08615 RluA family pseudouridine synthase 0.20 HMPREF1058_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02845 RluA family pseudouridine synthase 0.20 ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 72
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.18 CCNA_03528 RNA methyltransferase low > 67
Caulobacter crescentus NA1000 0.33 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.18 CCNA_03528 RNA methyltransferase 0.70 1
Magnetospirillum magneticum AMB-1 0.33 AMB_RS16095 RluA family pseudouridine synthase 0.15 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 64
Agrobacterium fabrum C58 0.33 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily 0.19 Atu0657 hypothetical protein — —
Bosea sp. OAE506 0.33 ABIE41_RS05635 RluA family pseudouridine synthase 0.19 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 77
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0642 pseudouridine synthase, RluA family 0.18 Echvi_3055 RNA methyltransferase, RsmE family low > 79
Bacteroides thetaiotaomicron VPI-5482 0.32 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) 0.19 BT4328 conserved hypothetical protein (NCBI ptt file) low > 81
Rhodospirillum rubrum S1H 0.32 Rru_A1111 Pseudouridine synthase, RluD (NCBI) 0.15 Rru_A0571 hypothetical protein (NCBI) 0.86 2
Fusobacterium nucleatum SB010 0.32 HUW76_08575 RluA family pseudouridine synthase 0.22 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 35
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D 0.21 Synpcc7942_0806 hypothetical protein low > 38
Bacteroides ovatus ATCC 8483 0.32 BACOVA_03528 pseudouridine synthase, RluA family 0.20 BACOVA_05130 RNA methyltransferase, RsmE family 0.52 7
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15205 RNA pseudouridine synthase 0.20 CA264_05265 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS03250 RluA family pseudouridine synthase 0.18 HMPREF1181_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 56
Dinoroseobacter shibae DFL-12 0.31 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) 0.18 Dshi_3099 protein of unknown function DUF558 (RefSeq) low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS03985 RluA family pseudouridine synthase 0.20 ABZR88_RS17085 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Variovorax sp. SCN45 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.32 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) low > 127
Acidovorax sp. GW101-3H11 0.30 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.36 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 79
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS12640 RluA family pseudouridine synthase 0.20 HMPREF1078_RS10135 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS14415 pseudouridine synthase 0.19 CA265_RS23620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 10
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS10060 RluA family pseudouridine synthase 0.17 A4249_RS00350 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Mycobacterium tuberculosis H37Rv 0.23 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family 0.14 Rv2372c Conserved hypothetical protein — —
Bifidobacterium breve UCC2003 0.19 BBR_RS17135 RluA family pseudouridine synthase 0.16 BBR_RS15150 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 34

Not shown: 3 genomes with orthologs for Psyr_0726 only; 10 genomes with orthologs for Psyr_0453 only