Conservation of cofitness between PP_2000 and PP_5352 in Pseudomonas putida KT2440

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2000 amidophosphoribosyl transferase 1.0 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.36 20
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.87 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas sp. RS175 0.94 PFR28_02811 Amidophosphoribosyltransferase 0.87 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_20690 amidophosphoribosyltransferase 0.88 AO353_10055 DNA helicase II — —
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.87 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas fluorescens SBW25 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.86 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.86 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_21465 amidophosphoribosyltransferase 0.87 AO356_11990 DNA helicase II low > 104
Pseudomonas stutzeri RCH2 0.93 Psest_2579 amidophosphoribosyltransferase 0.79 Psest_4098 Superfamily I DNA and RNA helicases low > 67
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1668 amidophosphoribosyltransferase 0.86 Psyr_5065 ATP-dependent DNA helicase UvrD 0.53 83
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1668 amidophosphoribosyltransferase 0.86 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas sp. S08-1 0.91 OH686_04420 amidophosphoribosyltransferase 0.80 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA — —
Marinobacter adhaerens HP15 0.76 HP15_1821 amidophosphoribosyltransferase 0.64 HP15_3403 UvrD/REP helicase — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases — —
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS06775 amidophosphoribosyltransferase 0.54 ABZR86_RS16965 DNA helicase II low > 74
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_05570 purF amidophosphoribosyltransferase 0.54 OKGIIK_16775 DNA helicase low > 52
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01340 amidophosphoribosyltransferase 0.53 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01105 amidophosphoribosyltransferase 0.53 LRK55_RS06595 DNA helicase II — —
Shewanella amazonensis SB2B 0.64 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.60 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) low > 62
Dickeya dadantii 3937 0.64 DDA3937_RS14435 amidophosphoribosyltransferase 0.63 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS15335 amidophosphoribosyltransferase 0.63 DZA65_RS21080 DNA helicase II low > 75
Shewanella sp. ANA-3 0.64 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.61 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Dickeya dianthicola 67-19 0.64 HGI48_RS14405 amidophosphoribosyltransferase 0.62 HGI48_RS20035 DNA helicase II low > 71
Pectobacterium carotovorum WPP14 0.64 HER17_RS07020 amidophosphoribosyltransferase 0.63 HER17_RS01360 DNA helicase II low > 75
Shewanella oneidensis MR-1 0.64 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.61 SO0467 uvrD DNA helicase II (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05115 amidophosphoribosyltransferase 0.62 CSW01_01015 DNA helicase II low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_02524 Amidophosphoribosyltransferase 0.61 MIT1002_00153 DNA helicase II low > 70
Escherichia coli BL21 0.63 ECD_02237 amidophosphoribosyltransferase 0.63 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli BW25113 0.63 b2312 purF amidophosphoribosyltransferase (NCBI) 0.63 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) low > 76
Serratia liquefaciens MT49 0.63 IAI46_17810 amidophosphoribosyltransferase 0.63 IAI46_00735 DNA helicase II low > 86
Escherichia coli ECRC62 0.63 BNILDI_13255 purF amidophosphoribosyltransferase 0.63 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECOR27 0.63 NOLOHH_14335 purF amidophosphoribosyltransferase 0.63 NOLOHH_06540 uvrD DNA helicase II low > 57
Erwinia tracheiphila SCR3 0.63 LU632_RS07865 purF amidophosphoribosyltransferase 0.61 LU632_RS24125 uvrD DNA helicase II — —
Shewanella loihica PV-4 0.63 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.60 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Escherichia coli ECRC102 0.63 NIAGMN_20485 purF amidophosphoribosyltransferase 0.63 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.63 HEPCGN_21910 purF amidophosphoribosyltransferase 0.63 HEPCGN_13115 uvrD DNA helicase II low > 85
Escherichia coli ECRC101 0.63 OKFHMN_22715 purF amidophosphoribosyltransferase 0.63 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.63 MCAODC_13755 purF amidophosphoribosyltransferase 0.63 MCAODC_04915 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.63 EFB2_01546 Amidophosphoribosyltransferase 0.63 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECRC98 0.63 JDDGAC_26675 purF amidophosphoribosyltransferase 0.63 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS13405 amidophosphoribosyltransferase 0.63 ECOLIN_RS21885 DNA helicase II — —
Escherichia coli ECRC99 0.63 KEDOAH_05480 purF amidophosphoribosyltransferase 0.63 KEDOAH_13740 uvrD DNA helicase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.63 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Klebsiella michiganensis M5al 0.63 BWI76_RS20350 amidophosphoribosyltransferase 0.63 BWI76_RS01220 DNA-dependent helicase II low > 92
Lysobacter sp. OAE881 0.63 ABIE51_RS06180 amidophosphoribosyltransferase 0.55 ABIE51_RS01985 DNA helicase II low > 62
Enterobacter sp. TBS_079 0.63 MPMX20_03247 Amidophosphoribosyltransferase 0.63 MPMX20_04463 DNA helicase II low > 85
Enterobacter asburiae PDN3 0.63 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.63 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.63 OHPLBJKB_04237 DNA helicase II low > 73
Pantoea sp. MT58 0.63 IAI47_06275 amidophosphoribosyltransferase 0.61 IAI47_18390 DNA helicase II low > 76
Rahnella sp. WP5 0.63 EX31_RS19570 amidophosphoribosyltransferase 0.62 EX31_RS15175 DNA helicase II low > 89
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.53 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16445 amidophosphoribosyltransferase 0.45 HSERO_RS02160 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06060 amidophosphoribosyltransferase 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Ralstonia solanacearum UW163 0.60 UW163_RS11175 amidophosphoribosyltransferase 0.43 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS02550 amidophosphoribosyltransferase 0.43 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS14465 amidophosphoribosyltransferase 0.44 ABZR87_RS15705 UvrD-helicase domain-containing protein — —
Paraburkholderia graminis OAS925 0.60 ABIE53_004816 amidophosphoribosyltransferase 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS33840 amidophosphoribosyltransferase 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.60 RS_RS09930 amidophosphoribosyltransferase 0.44 RS_RS11220 DNA-dependent helicase — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS14765 amidophosphoribosyltransferase 0.43 RPSI07_RS13455 DNA-dependent helicase — —
Dechlorosoma suillum PS 0.59 Dsui_3186 amidophosphoribosyltransferase 0.45 Dsui_1227 DNA/RNA helicase, superfamily I — —
Castellaniella sp019104865 MT123 0.59 ABCV34_RS04130 amidophosphoribosyltransferase 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS14325 amidophosphoribosyltransferase 0.44 RR42_RS15090 DNA helicase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS17680 amidophosphoribosyltransferase 0.44 QEN71_RS05110 3'-5' exonuclease — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.57 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.43 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.43 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Variovorax sp. SCN45 0.56 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.44 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Variovorax sp. OAS795 0.56 ABID97_RS21635 amidophosphoribosyltransferase 0.45 ABID97_RS09150 UvrD-helicase domain-containing protein — —
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS03735 amidophosphoribosyltransferase 0.33 A4249_RS04960 UvrD-helicase domain-containing protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.29 DVU0161 purF amidophosphoribosyltransferase (TIGR) 0.20 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) — —
Azospirillum sp. SherDot2 0.28 MPMX19_00906 Amidophosphoribosyltransferase 0.36 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Rhodospirillum rubrum S1H 0.28 Rru_A0404 Amidophosphoribosyl transferase (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) low > 58
Azospirillum brasilense Sp245 0.28 AZOBR_RS08310 amidophosphoribosyltransferase 0.37 AZOBR_RS12445 DNA helicase II low > 97
Bosea sp. OAE506 0.28 ABIE41_RS17810 amidophosphoribosyltransferase 0.36 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Phaeobacter inhibens DSM 17395 0.27 PGA1_c10810 amidophosphoribosyltransferase PurF 0.33 PGA1_c09450 DNA helicase II UvrD low > 62
Mycobacterium tuberculosis H37Rv 0.27 Rv0808 Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase) 0.33 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_2132 amidophosphoribosyltransferase (RefSeq) 0.34 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS10545 amidophosphoribosyltransferase 0.33 AMB_RS03725 DNA helicase II — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14) 0.36 Ga0059261_0249 Superfamily I DNA and RNA helicases — —
Fusobacterium nucleatum SB010 0.25 HUW76_05170 amidophosphoribosyltransferase 0.31 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS10430 amidophosphoribosyltransferase 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61

Not shown: 12 genomes with orthologs for PP_2000 only; 10 genomes with orthologs for PP_5352 only