Conservation of cofitness between PP_1215 and PP_5230 in Pseudomonas putida KT2440

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_5230 Tyrosine recombinase XerC 0.46 4
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.75 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.75 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.78 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.78 AO353_09050 recombinase XerC 0.34 12
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.78 Pf6N2E2_4416 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.78 AO356_12725 recombinase XerC — —
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.79 PfGW456L13_842 Tyrosine recombinase XerC 0.46 2
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.78 PFR28_04378 Tyrosine recombinase XerC 0.38 9
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.75 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.75 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas simiae WCS417 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC 0.75 PS417_27595 recombinase XerC — —
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.75 Psest_3767 tyrosine recombinase XerC — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.74 OH686_13785 tyrosine recombinase XerC low > 80
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.41 CSW01_00650 tyrosine recombinase XerC low > 62
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.43 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.45 HP15_250 site-specific tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.42 Shewana3_0393 tyrosine recombinase XerC (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.42 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.38 9
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.42 Sama_3247 integrase/recombinase XerC (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.41 MIT1002_00157 Tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.44 HGI48_RS20045 tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.44 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.45 DDA3937_RS19890 tyrosine recombinase XerC — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.46 IAI46_00725 tyrosine recombinase XerC — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.45 IAI47_18400 tyrosine recombinase XerC low > 76
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.45 1
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.45 HER17_RS01350 tyrosine recombinase XerC 0.80 1
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.47 EX31_RS15165 tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.45 EX28DRAFT_4480 tyrosine recombinase XerC — —
Acinetobacter radioresistens SK82 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.34 MPMX26_02230 Tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 LU632_RS24135 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 HEPCGN_13125 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.45 OHPLBJKB_04239 Tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.46 BWI76_RS01210 tyrosine recombinase XerC — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.45 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.50 13
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.45 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.45 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.45 ECD_03687 site-specific tyrosine recombinase — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.45 EFB2_04826 Tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.45 GFF239 Tyrosine recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.37 H281DRAFT_02202 integrase/recombinase XerC — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.37 BPHYT_RS01655 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.37 ABIE53_000426 integrase/recombinase XerC — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.79 6
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.37 QEN71_RS00355 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02715 Holliday junction DNA helicase 0.39 RR42_RS00615 recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.39 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.37 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.37 RALBFv3_RS09675 tyrosine recombinase XerC — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS02080 Holliday junction resolvase 0.40 HSERO_RS21475 recombinase XerC — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.37 RS_RS00260 Tyrosine recombinase XerC 1 — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.43 Dsui_0651 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.40 RPSI07_RS23690 tyrosine recombinase XerC — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.35 Ac3H11_1995 Tyrosine recombinase XerC — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.38 ABID97_RS06150 tyrosine recombinase XerC 0.52 1
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.38 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.40 GFF547 Tyrosine recombinase XerC — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.48 ABZR86_RS15025 tyrosine recombinase XerC — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.49 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.45 LRK54_RS08535 tyrosine recombinase XerC — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.45 LRK55_RS08300 tyrosine recombinase XerC — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.28 ABIE41_RS07870 tyrosine recombinase XerC 0.71 1
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.37 ABCV34_RS13455 tyrosine recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.48 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.28 Rru_A1220 Phage integrase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.27 Dshi_5002 xerC hypothetical protein (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.26 AMB_RS21485 tyrosine recombinase XerC — —
Caulobacter crescentus NA1000 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family — —
Rhizobium sp. OAE497 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.27 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Agrobacterium fabrum C58 0.30 Atu3724 Holliday junction resolvase 0.27 Atu2628 site-specific recombinase — —
Sinorhizobium meliloti 1021 0.30 SMc03967 Holliday junction resolvase 0.26 SMc02489 site-specific tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.45 ABIE51_RS03035 tyrosine recombinase XerC — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.25 A4249_RS12210 tyrosine recombinase XerC — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.27 PGA1_c05760 putative tyrosine recombinase XerC — —
Rhodopseudomonas palustris CGA009 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.26 TX73_000945 tyrosine recombinase XerC — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.24 Ga0059261_2764 Site-specific recombinase XerD — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase 0.12 Synpcc7942_B2651 xerC integrase/recombinase — —

Not shown: 9 genomes with orthologs for PP_1215 only; 3 genomes with orthologs for PP_5230 only