| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0850 | | Dual-specificity RNA methyltransferase RlmN | 1.0 | PP_4891 | | integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex | 0.32 | 9 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_06605 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.86 | AO356_08640 | | membrane protease HflC | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_3181 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.86 | Pf6N2E2_3611 | | HflC protein | — | — |
| Pseudomonas sp. RS175 | 0.88 | PFR28_00294 | | Dual-specificity RNA methyltransferase RlmN | 0.82 | PFR28_05124 | | Modulator of FtsH protease HflC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_15875 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.87 | AO353_13160 | | membrane protease HflC | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_4865 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.86 | PfGW456L13_151 | | HflC protein | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.85 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.85 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_857 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.87 | Pf1N1B4_1409 | | HflC protein | — | — |
| Pseudomonas simiae WCS417 | 0.87 | PS417_23160 | | 50S rRNA methyltransferase | 0.81 | PS417_02505 | | membane protease HflC | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.88 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.88 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_17515 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.77 | OH686_09455 | | HflC protein | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1259 | | 23S rRNA m2A2503 methyltransferase | 0.76 | Psest_0686 | | Membrane protease subunits, stomatin/prohibitin homologs | — | — |
| Marinobacter adhaerens HP15 | 0.66 | HP15_1490 | | conserved hypothetical protein | 0.55 | HP15_2496 | | HflC | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.57 | B158DRAFT_1149 | | 23S rRNA m2A2503 methyltransferase | 0.38 | B158DRAFT_1955 | | HflC protein | low | > 40 |
| Lysobacter sp. OAE881 | 0.56 | ABIE51_RS09415 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.38 | ABIE51_RS06555 | | protease modulator HflC | low | > 62 |
| Escherichia coli Nissle 1917 | 0.56 | ECOLIN_RS14300 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | ECOLIN_RS24245 | | protease modulator HflC | — | — |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_25385 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | JDDGAC_15880 | hflC | protease modulator HflC | — | — |
| Escherichia coli BL21 | 0.56 | ECD_02409 | | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent | 0.38 | ECD_04042 | | HflB protease modulator specific for phage lambda cII repressor | low | > 60 |
| Escherichia fergusonii Becca | 0.56 | EFB2_01373 | | Dual-specificity RNA methyltransferase RlmN | 0.38 | EFB2_04360 | | Modulator of FtsH protease HflC | low | > 86 |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_19480 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | NIAGMN_10090 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC101 | 0.56 | OKFHMN_21710 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | OKFHMN_12240 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_13360 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | NOLOHH_04505 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC62 | 0.56 | BNILDI_12160 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | BNILDI_06985 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_20830 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | HEPCGN_10470 | hflC | protease modulator HflC | low | > 85 |
| Escherichia coli BW25113 | 0.56 | b2517 | yfgB | predicted enzyme (NCBI) | 0.38 | b4175 | hflC | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_06510 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | KEDOAH_15915 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC101 | 0.56 | MCAODC_12240 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | MCAODC_02755 | hflC | protease modulator HflC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01192 | | Dual-specificity RNA methyltransferase RlmN | 0.38 | OHPLBJKB_03867 | | Modulator of FtsH protease HflC | low | > 73 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_0126 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.36 | EX28DRAFT_3372 | | HflC protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_03395 | | Dual-specificity RNA methyltransferase RlmN | 0.38 | MPMX20_00456 | | Modulator of FtsH protease HflC | low | > 85 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS21095 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | BWI76_RS02550 | | protease modulator HflC | low | > 92 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS15480 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.37 | DDA3937_RS18595 | | protease modulator HflC | — | — |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS06085 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.39 | HER17_RS02600 | | protease modulator HflC | low | > 75 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_19290 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.39 | IAI46_01640 | | protease modulator HflC | low | > 86 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS16665 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.37 | DZA65_RS19665 | | protease modulator HflC | low | > 75 |
| Rahnella sp. WP5 | 0.54 | EX31_RS20525 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.37 | EX31_RS08805 | | protease modulator HflC | low | > 89 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS13155 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.42 | RR42_RS13100 | | membrane protein | — | — |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS15590 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.37 | HGI48_RS18530 | | protease modulator HflC | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS17815 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.38 | LU632_RS02070 | hflC | protease modulator HflC | low | > 74 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_1226 | | hypothetical protein (RefSeq) | 0.46 | Shewana3_0600 | | HflC protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.54 | SO3315 | | conserved hypothetical protein TIGR00048 (NCBI ptt file) | 0.46 | SO0606 | hflC | hflC protein (NCBI ptt file) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF2414 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.38 | GFF828 | | HflC protein | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS10900 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.39 | ABZR87_RS10955 | | protease modulator HflC | low | > 80 |
| Dechlorosoma suillum PS | 0.54 | Dsui_3145 | | 23S rRNA m2A2503 methyltransferase | 0.48 | Dsui_3134 | | membrane protease subunit, stomatin/prohibitin | — | — |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS18115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.41 | RPSI07_RS18060 | | protease modulator HflC | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS06070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | RS_RS06125 | | protease modulator HflC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS15260 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | RALBFv3_RS15315 | | protease modulator HflC | — | — |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS12725 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | UW163_RS12780 | | protease modulator HflC | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS00070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.42 | LRK54_RS00615 | | protease modulator HflC | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS18065 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.42 | LRK55_RS00385 | | protease modulator HflC | low | > 63 |
| Shewanella amazonensis SB2B | 0.53 | Sama_2368 | | hypothetical protein (RefSeq) | 0.45 | Sama_3022 | | hflC protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.53 | Shew_1287 | | hypothetical protein (RefSeq) | 0.45 | Shew_0569 | | HflC protein (RefSeq) | low | > 60 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.2737.1 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.41 | Xcc-8004.3954.1 | | HflC protein | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07140 | rlmN | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.46 | OKGIIK_06645 | hflC | protease modulator HflC | low | > 52 |
| Pantoea sp. MT58 | 0.53 | IAI47_05040 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.39 | IAI47_02605 | | protease modulator HflC | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS05455 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | ABZR86_RS08350 | | protease modulator HflC | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_03930 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.40 | CSW01_01850 | | protease modulator HflC | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS05965 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.27 | QEN71_RS06015 | | protease modulator HflC | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_00514 | | 23S rRNA m(2)A-2503 methyltransferase | 0.32 | H281DRAFT_00524 | | protease FtsH subunit HflC | — | — |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS12590 | | dual-specificity RNA methyltransferase RlmN | 0.28 | BPHYT_RS12540 | | membrane protein | — | — |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_002744 | | 23S rRNA (adenine2503-C2)-methyltransferase | 0.32 | ABIE53_002734 | | membrane protease subunit HflC | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS14810 | | 50S rRNA methyltransferase | 0.42 | HSERO_RS14760 | | membrane protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_1791 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.35 | Ac3H11_1802 | | HflC protein | low | > 79 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_02791 | | Dual-specificity RNA methyltransferase RlmN | 0.48 | MIT1002_03785 | | Modulator of FtsH protease HflC | low | > 70 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.50 | GFF4866 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.30 | GFF4855 | | HflC protein | low | > 90 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS14210 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.34 | ABID97_RS14265 | | protease modulator HflC | low | > 91 |
| Variovorax sp. SCN45 | 0.49 | GFF992 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) | 0.33 | GFF1003 | | HflC protein | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS02610 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.36 | ABCV34_RS02665 | | protease modulator HflC | — | — |
| Azospirillum brasilense Sp245 | 0.46 | AZOBR_RS00800 | | 50S rRNA methyltransferase | 0.36 | AZOBR_RS06525 | | membrane protein | low | > 97 |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_02413 | | Dual-specificity RNA methyltransferase RlmN | 0.41 | MPMX19_01250 | | Modulator of FtsH protease HflC | — | — |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c36240 | | ribosomal RNA large subunit methyltransferase N | 0.35 | PGA1_c23700 | | protein HflC | low | > 62 |
| Agrobacterium fabrum C58 | 0.43 | Atu2673 | | hypothetical protein | 0.31 | Atu2044 | | HFLC protein | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_3311 | | radical SAM enzyme, Cfr family (RefSeq) | 0.34 | Dshi_2735 | | HflC protein (RefSeq) | low | > 64 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS05715 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | AMB_RS17655 | | protease modulator HflC | — | — |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_002060 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | TX73_018075 | | protease modulator HflC | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.41 | SMc03831 | | hypothetical protein | 0.29 | SMc01440 | | hydrolase serine protease transmembrane protein | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_1407 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.23 | Ga0059261_1381 | | Membrane protease subunits, stomatin/prohibitin homologs | low | > 68 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS04880 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.33 | ABIE41_RS12855 | | protease modulator HflC | low | > 77 |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS18200 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.26 | ABIE40_RS11530 | | protease modulator HflC | low | > 107 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_1431 | | radical SAM enzyme, Cfr family (RefSeq) | 0.38 | DvMF_2675 | | HflC protein (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU2904 | | radical SAM enzyme, Cfr family (TIGR) | 0.37 | DVU0683 | | hflC protein, putative (TIGR) | low | > 55 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.29 | Echvi_0755 | | 23S rRNA m2A2503 methyltransferase | 0.24 | Echvi_2032 | | HflC protein | low | > 79 |
Not shown: 16 genomes with orthologs for PP_0850 only; 1 genomes with orthologs for PP_4891 only