Conservation of cofitness between PP_1215 and PP_1783 in Pseudomonas putida KT2440

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_1783 dTDP-glucose pyrophosphorylase 0.29 17
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.71 Pf1N1B4_341 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.66 AO353_11880 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.66 AO356_10045 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.67 Pf6N2E2_3879 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.67 PFR28_04893 Glucose-1-phosphate thymidylyltransferase 2 — —
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.70 PfGW456L13_2199 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas simiae WCS417 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC 0.68 PS417_01325 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.67 Psest_4263 glucose-1-phosphate thymidylyltransferase, short form — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.68 OH686_14375 glucose-1-phosphate thymidylyltransferase low > 80
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.68 Shew_1402 glucose-1-phosphate thymidylyltransferase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.66 HP15_p187g50 glucose-1-phosphate thymidylyltransferase 1 — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.68 Shewana3_1380 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.64 SO3186 rfbA glucose-1-phosphate-thymidylyltransferase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.65 Sama_2240 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.71 MIT1002_03560 Glucose-1-phosphate thymidylyltransferase 1 — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.66 HGI48_RS06760 glucose-1-phosphate thymidylyltransferase RfbA — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.66 DZA65_RS07115 glucose-1-phosphate thymidylyltransferase RfbA — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.66 DDA3937_RS06740 glucose-1-phosphate thymidylyltransferase RfbA — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.67 IAI46_00615 glucose-1-phosphate thymidylyltransferase RfbA — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.65 IAI47_18495 glucose-1-phosphate thymidylyltransferase RfbA low > 76
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.74 MPMX20_03012 Glucose-1-phosphate thymidylyltransferase 1 0.38 6
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.66 HER17_RS14595 glucose-1-phosphate thymidylyltransferase RfbA — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.66 EX28DRAFT_0527 glucose-1-phosphate thymidylyltransferase, short form — —
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.65 EX31_RS11520 glucose-1-phosphate thymidylyltransferase RfbA — —
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.70 LU632_RS08860 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Acinetobacter radioresistens SK82 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.67 MPMX26_00452 Glucose-1-phosphate thymidylyltransferase 1 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.67 OHPLBJKB_01661 Glucose-1-phosphate thymidylyltransferase 2 — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 KEDOAH_13595 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 OKFHMN_14555 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 MCAODC_05060 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 JDDGAC_18180 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.76 EFB2_01815 Glucose-1-phosphate thymidylyltransferase 1 — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 NOLOHH_06690 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 BNILDI_04835 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.75 b2039 rfbA glucose-1-phosphate thymidylyltransferase (NCBI) low > 76
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.64 NIAGMN_12310 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.76 HEPCGN_03115 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.65 BWI76_RS19060 glucose-1-phosphate thymidylyltransferase — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.64 ECOLIN_RS21750 glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.76 ECD_01945 glucose-1-phosphate thymidylyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.75 GFF3889 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.77 H281DRAFT_04823 Glucose-1-phosphate thymidylyltransferase — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.77 BPHYT_RS04270 glucose-1-phosphate thymidylyltransferase — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.75 ABIE53_001138 glucose-1-phosphate thymidylyltransferase — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.78 QEN71_RS25750 glucose-1-phosphate thymidylyltransferase RfbA — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.76 ABZR87_RS08655 glucose-1-phosphate thymidylyltransferase RfbA 0.55 20
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.77 UW163_RS00910 glucose-1-phosphate thymidylyltransferase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.77 RALBFv3_RS12655 glucose-1-phosphate thymidylyltransferase — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.77 RS_RS03440 glucose-1-phosphate thymidylyltransferase — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.74 Dsui_1950 glucose-1-phosphate thymidylyltransferase, short form — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.78 RPSI07_RS20605 glucose-1-phosphate thymidylyltransferase — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.83 Ac3H11_1882 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.78 ABID97_RS05670 glucose-1-phosphate thymidylyltransferase RfbA 0.40 27
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.77 GFF6880 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.77 GFF1839 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.71 ABZR86_RS18730 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.66 OKGIIK_01170 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.67 LRK54_RS05670 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.67 LRK55_RS05425 glucose-1-phosphate thymidylyltransferase RfbA — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.69 ABIE41_RS02865 glucose-1-phosphate thymidylyltransferase RfbA low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC 0.62 CA264_17920 glucose-1-phosphate thymidylyltransferase — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.76 ABCV34_RS13015 glucose-1-phosphate thymidylyltransferase RfbA — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.67 Xcc-8004.4485.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.64 DVU0925 rfbA glucose-1-phosphate thymidylyltransferase (TIGR) — —
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.69 Rru_B0048 Glucose-1-phosphate thymidylyltransferase, long form (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.59 AMB_RS00300 glucose-1-phosphate thymidylyltransferase — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.61 Dshi_4118 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.70 CCNA_01199 glucose-1-phosphate thymidylyltransferase — —
Caulobacter crescentus NA1000 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.70 CCNA_01199 glucose-1-phosphate thymidylyltransferase low > 66
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.67 HMPREF1078_RS00175 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhizobium sp. OAE497 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.67 ABIE40_RS08660 glucose-1-phosphate thymidylyltransferase RfbA low > 107
Agrobacterium fabrum C58 0.30 Atu3724 Holliday junction resolvase 0.66 Atu4615 glucose-1-phosphate thymidylyltransferase — —
Sinorhizobium meliloti 1021 0.30 SMc03967 Holliday junction resolvase 0.60 SM_b21324 glucose-1-phosphate thymidylyltransferase low > 103
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.68 ABIE51_RS15615 glucose-1-phosphate thymidylyltransferase RfbA — —
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.65 HMPREF1058_RS06630 glucose-1-phosphate thymidylyltransferase RfbA — —
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.65 ABI39_RS13385 glucose-1-phosphate thymidylyltransferase RfbA low > 72
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.61 HMPREF1181_RS08025 glucose-1-phosphate thymidylyltransferase RfbA — —
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.64 BACOVA_03744 glucose-1-phosphate thymidylyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.64 BT0463 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.65 PGA1_65p00220 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodopseudomonas palustris CGA009 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.68 TX73_000620 glucose-1-phosphate thymidylyltransferase RfbA — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase 0.72 Synpcc7942_2101 rfbA glucose-1-phosphate thymidylyltransferase — —

Not shown: 7 genomes with orthologs for PP_1215 only; 8 genomes with orthologs for PP_1783 only