| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS04220 | | epoxyqueuosine reductase | 1.0 | HSERO_RS05850 | | exodeoxyribonuclease VII large subunit | 0.30 | 18 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS02745 | | tRNA epoxyqueuosine(34) reductase QueG | 0.52 | QEN71_RS02835 | | exodeoxyribonuclease VII large subunit | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_003363 | | epoxyqueuosine reductase | 0.51 | ABIE53_003344 | | exodeoxyribonuclease VII large subunit | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS15960 | | iron-sulfur cluster binding protein | 0.52 | BPHYT_RS15865 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS03405 | | epoxyqueuosine reductase | 0.47 | RR42_RS03475 | | exodeoxyribonuclease VII large subunit | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS12175 | | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | RPSI07_RS12235 | | exodeoxyribonuclease VII large subunit | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS12740 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | RS_RS12670 | | exodeoxyribonuclease VII large subunit | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS00775 | | tRNA epoxyqueuosine(34) reductase QueG | 0.48 | ABZR87_RS00710 | | exodeoxyribonuclease VII large subunit | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS05120 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | RALBFv3_RS05060 | | exodeoxyribonuclease VII large subunit | low | > 76 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS08505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | UW163_RS08565 | | exodeoxyribonuclease VII large subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04128 | | epoxyqueuosine reductase | 0.53 | H281DRAFT_04109 | | Exodeoxyribonuclease VII large subunit | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF5474 | | Epoxyqueuosine (oQ) reductase QueG | 0.35 | GFF4511 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_306 | | Epoxyqueuosine (oQ) reductase QueG | 0.33 | Ac3H11_2382 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 79 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS20285 | | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | ABID97_RS16945 | | exodeoxyribonuclease VII large subunit | low | > 91 |
| Pseudomonas sp. S08-1 | 0.59 | OH686_09500 | | epoxyqueuosine reductase | 0.32 | OH686_17580 | | exodeoxyribonuclease VII, large subunit | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.32 | Psyr_1259 | | Exodeoxyribonuclease VII large subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.32 | Psyr_1259 | | Exodeoxyribonuclease VII large subunit | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS00835 | | tRNA epoxyqueuosine(34) reductase QueG | 0.34 | ABZR86_RS06815 | | exodeoxyribonuclease VII large subunit | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS13905 | | tRNA epoxyqueuosine(34) reductase QueG | 0.40 | ABCV34_RS05330 | | exodeoxyribonuclease VII large subunit | low | > 48 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_1418 | | Epoxyqueuosine (oQ) reductase QueG | 0.32 | Pf1N1B4_844 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.33 | PFLU_RS24755 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_13115 | | epoxyqueuosine reductase | 0.32 | AO353_15935 | | exodeoxyribonuclease | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.33 | PFLU_RS24755 | | exodeoxyribonuclease VII large subunit | low | > 109 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_05115 | | Epoxyqueuosine reductase | 0.32 | PFR28_00307 | | Exodeoxyribonuclease 7 large subunit | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_160 | | Epoxyqueuosine (oQ) reductase QueG | 0.32 | PfGW456L13_4851 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_02460 | | epoxyqueuosine reductase | 0.33 | PS417_23095 | | exodeoxyribonuclease | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_08685 | | epoxyqueuosine reductase | 0.32 | AO356_06540 | | exodeoxyribonuclease | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3620 | | Epoxyqueuosine (oQ) reductase QueG | 0.32 | Pf6N2E2_3168 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 103 |
| Serratia liquefaciens MT49 | 0.55 | IAI46_01595 | | tRNA epoxyqueuosine(34) reductase QueG | 0.34 | IAI46_19215 | | exodeoxyribonuclease VII large subunit | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_03900 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.33 | OKGIIK_07700 | xseA | exodeoxyribonuclease VII large subunit | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS15130 | | tRNA epoxyqueuosine(34) reductase QueG | 0.33 | LRK54_RS17185 | | exodeoxyribonuclease VII large subunit | low | > 59 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_12285 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | OKFHMN_21755 | xseA | exodeoxyribonuclease VII large subunit | low | > 80 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_15870 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | KEDOAH_06465 | xseA | exodeoxyribonuclease VII large subunit | — | — |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_15925 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | JDDGAC_25430 | xseA | exodeoxyribonuclease VII large subunit | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_0677 | | iron-sulfur cluster binding protein, putative | 0.34 | Psest_1284 | | exodeoxyribonuclease VII, large subunit | low | > 67 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_10515 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | HEPCGN_20895 | xseA | exodeoxyribonuclease VII large subunit | low | > 87 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_10135 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | NIAGMN_19525 | xseA | exodeoxyribonuclease VII large subunit | — | — |
| Variovorax sp. SCN45 | 0.55 | GFF4805 | | Epoxyqueuosine reductase (EC 1.17.99.6) QueG | 0.34 | GFF349 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 127 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS14845 | | tRNA epoxyqueuosine(34) reductase QueG | 0.34 | LRK55_RS17410 | | exodeoxyribonuclease VII large subunit | low | > 63 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_03876 | | Epoxyqueuosine reductase | 0.36 | OHPLBJKB_01200 | | Exodeoxyribonuclease 7 large subunit | low | > 73 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_02800 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | MCAODC_12285 | xseA | exodeoxyribonuclease VII large subunit | low | > 87 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_04550 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | NOLOHH_13405 | xseA | exodeoxyribonuclease VII large subunit | low | > 75 |
| Escherichia coli BL21 | 0.55 | ECD_04033 | | epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis | 0.36 | ECD_02401 | | exonuclease VII, large subunit | low | > 61 |
| Escherichia coli BW25113 | 0.55 | b4166 | yjeS | predicted Fe-S electron transport protein (NCBI) | 0.36 | b2509 | xseA | exodeoxyribonuclease VII large subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_06940 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | BNILDI_12205 | xseA | exodeoxyribonuclease VII large subunit | low | > 75 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS24200 | | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | ECOLIN_RS14245 | | exodeoxyribonuclease VII large subunit | low | > 55 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS19710 | | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | DZA65_RS16615 | | exodeoxyribonuclease VII large subunit | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS18575 | | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | HGI48_RS15540 | | exodeoxyribonuclease VII large subunit | low | > 71 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS18645 | | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | DDA3937_RS15425 | | exodeoxyribonuclease VII large subunit | low | > 74 |
| Pseudomonas putida KT2440 | 0.55 | PP_4900 | | epoxyqueuosine reductase | 0.31 | PP_1027 | | Exodeoxyribonuclease 7 large subunit | low | > 96 |
| Escherichia fergusonii Becca | 0.55 | EFB2_04369 | | Epoxyqueuosine reductase | 0.35 | EFB2_01384 | | Exodeoxyribonuclease 7 large subunit | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF819 | | Epoxyqueuosine (oQ) reductase QueG | 0.35 | GFF2159 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS02505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.36 | BWI76_RS21035 | | exodeoxyribonuclease VII large subunit | low | > 92 |
| Marinobacter adhaerens HP15 | 0.54 | HP15_2505 | | iron-sulfur cluster binding protein | 0.35 | HP15_2052 | | exodeoxyribonuclease VII large subunit | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.54 | HER17_RS02555 | | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | HER17_RS06150 | | exodeoxyribonuclease VII large subunit | low | > 75 |
| Shewanella oneidensis MR-1 | 0.54 | SO3861 | | iron-sulfur cluster-binding protein (NCBI ptt file) | 0.34 | SO3294 | xseA | exodeoxyribonuclease VII, large subunit (NCBI ptt file) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_00447 | | Epoxyqueuosine reductase | 0.36 | MPMX20_03383 | | Exodeoxyribonuclease 7 large subunit | low | > 85 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0745 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.34 | Shewana3_1234 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | low | > 73 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_3363 | | epoxyqueuosine reductase | 0.36 | EX28DRAFT_0138 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 76 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS08045 | | tRNA epoxyqueuosine(34) reductase QueG | 0.31 | ABIE51_RS13750 | | exodeoxyribonuclease VII large subunit | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_03794 | | Epoxyqueuosine reductase | 0.34 | MIT1002_02780 | | Exodeoxyribonuclease 7 large subunit | low | > 70 |
| Shewanella loihica PV-4 | 0.53 | Shew_2979 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.33 | Shew_1296 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_01810 | | tRNA epoxyqueuosine(34) reductase QueG | 0.34 | CSW01_03975 | | exodeoxyribonuclease VII large subunit | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.2252.1 | | Epoxyqueuosine (oQ) reductase QueG | 0.33 | Xcc-8004.2251.1 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 74 |
| Pantoea sp. MT58 | 0.52 | IAI47_02560 | | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | IAI47_05100 | | exodeoxyribonuclease VII large subunit | low | > 76 |
| Rahnella sp. WP5 | 0.52 | EX31_RS08850 | | tRNA epoxyqueuosine(34) reductase QueG | 0.35 | EX31_RS20455 | | exodeoxyribonuclease VII large subunit | low | > 89 |
| Dechlorosoma suillum PS | 0.50 | Dsui_3502 | | iron-sulfur cluster binding protein, putative | 0.46 | Dsui_3268 | | exodeoxyribonuclease VII, large subunit | low | > 51 |
| Shewanella amazonensis SB2B | 0.50 | Sama_2625 | | iron-sulfur cluster-binding protein (RefSeq) | 0.33 | Sama_2360 | xseA | exodeoxyribonuclease VII large subunit (RefSeq) | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_01783 | | Epoxyqueuosine reductase | 0.11 | MPMX26_01581 | | Exodeoxyribonuclease 7 large subunit | — | — |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_0486 | | iron-sulfur cluster binding protein, putative | 0.35 | B158DRAFT_1157 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | low | > 40 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS01310 | | tRNA epoxyqueuosine(34) reductase QueG | 0.26 | ABIE40_RS01205 | | exodeoxyribonuclease VII large subunit | low | > 107 |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0279 | | 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) | 0.22 | Rru_A0159 | | Exodeoxyribonuclease VII (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.32 | Atu0292 | | iron-sulfur cluster binding protein | 0.24 | Atu0269 | | exodeoxyribonuclease VII large subunit | 0.28 | 37 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS11375 | | tRNA epoxyqueuosine(34) reductase QueG | 0.23 | A4249_RS09265 | | exodeoxyribonuclease VII large subunit | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.25 | CCNA_02329 | | exodeoxyribonuclease VII large subunit | low | > 67 |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.25 | CCNA_02329 | | exodeoxyribonuclease VII large subunit | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_000215 | | tRNA epoxyqueuosine(34) reductase QueG | 0.25 | TX73_005960 | | exodeoxyribonuclease VII large subunit | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_1058 | | epoxyqueuosine reductase | 0.23 | Ga0059261_1440 | | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c34310 | | Uncharacterized Fe-S protein | 0.27 | PGA1_c23600 | | exodeoxyribonuclease 7 large subunit | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_3307 | | domain of unknown function DUF1730 (RefSeq) | 0.25 | Dshi_2727 | | exodeoxyribonuclease VII, large subunit (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.30 | CA264_19810 | | epoxyqueuosine reductase | 0.14 | CA264_02365 | | exodeoxyribonuclease VII large subunit | 0.44 | 29 |
| Synechococcus elongatus PCC 7942 | 0.27 | Synpcc7942_0530 | | 4Fe-4S cluster binding | 0.18 | Synpcc7942_0368 | xseA | exodeoxyribonuclease VII large subunit | low | > 38 |
| Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS06835 | | tRNA epoxyqueuosine(34) reductase QueG | 0.15 | HMPREF1078_RS12780 | | exodeoxyribonuclease VII large subunit | low | > 61 |
Not shown: 6 genomes with orthologs for HSERO_RS04220 only; 12 genomes with orthologs for HSERO_RS05850 only