Conservation of cofitness between HSERO_RS05455 and HSERO_RS03270 in Herbaspirillum seropedicae SmR1

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05455 gamma-glutamyltranspeptidase 1.0 HSERO_RS03270 protein RecA 0.37 19
Azospirillum sp. SherDot2 0.72 MPMX19_05752 Glutathione hydrolase proenzyme 0.68 MPMX19_00869 Protein RecA — —
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1090 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.74 Ac3H11_1255 RecA protein — —
Castellaniella sp019104865 MT123 0.65 ABCV34_RS11415 gamma-glutamyltransferase 0.78 ABCV34_RS04460 recombinase RecA low > 48
Klebsiella michiganensis M5al 0.59 BWI76_RS26275 gamma-glutamyltransferase 0.68 BWI76_RS22180 recombinase RecA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF561 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.68 GFF4693 RecA protein — —
Escherichia coli ECOR38 0.58 HEPCGN_15620 ggt gamma-glutamyltransferase 0.68 HEPCGN_19900 recA recombinase RecA low > 87
Escherichia coli ECRC100 0.58 OKFHMN_16800 ggt gamma-glutamyltransferase 0.68 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC99 0.58 KEDOAH_11340 ggt gamma-glutamyltransferase 0.68 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECRC102 0.58 NIAGMN_14570 ggt gamma-glutamyltransferase 0.68 NIAGMN_18475 recA recombinase RecA — —
Shewanella amazonensis SB2B 0.58 Sama_1566 gamma-glutamyltransferase (RefSeq) 0.67 Sama_1046 recA recombinase A (RefSeq) low > 62
Escherichia fergusonii Becca 0.58 EFB2_00375 Glutathione hydrolase proenzyme 0.68 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC98 0.58 JDDGAC_20430 ggt gamma-glutamyltransferase 0.68 JDDGAC_24370 recA recombinase RecA — —
Escherichia coli Nissle 1917 0.58 ECOLIN_RS19715 gamma-glutamyltransferase 0.68 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00256 Glutathione hydrolase proenzyme 0.68 OHPLBJKB_01035 Protein RecA low > 73
Escherichia coli ECRC62 0.58 BNILDI_02915 ggt gamma-glutamyltransferase 0.68 BNILDI_11105 recA recombinase RecA low > 75
Escherichia coli ECOR27 0.58 NOLOHH_08590 ggt gamma-glutamyltransferase 0.68 NOLOHH_12545 recA recombinase RecA low > 75
Escherichia coli ECRC101 0.58 MCAODC_07330 ggt gamma-glutamyltransferase 0.68 MCAODC_11230 recA recombinase RecA low > 87
Escherichia coli BW25113 0.58 b3447 ggt gamma-glutamyltranspeptidase periplasmic precursor (NCBI) 0.68 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli BL21 0.58 ECD_03296 gamma-glutamyltranspeptidase 0.68 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 61
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4279 gamma-glutamyltranspeptidase 0.67 EX28DRAFT_2785 protein RecA — —
Shewanella loihica PV-4 0.57 Shew_2158 gamma-glutamyltransferase (RefSeq) 0.67 Shew_1215 recA recombinase A (RefSeq) low > 60
Enterobacter sp. TBS_079 0.57 MPMX20_04323 Glutathione hydrolase proenzyme 0.68 MPMX20_03580 Protein RecA low > 85
Erwinia tracheiphila SCR3 0.56 LU632_RS19180 ggt gamma-glutamyltransferase 0.69 LU632_RS15735 recA recombinase RecA low > 74
Rhodospirillum rubrum S1H 0.56 Rru_A0385 Gamma-glutamyltransferase (NCBI) 0.69 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Pantoea sp. MT58 0.56 IAI47_01620 gamma-glutamyltransferase 0.68 IAI47_04300 recombinase RecA low > 76
Shewanella oneidensis MR-1 0.56 SO1952 ggt-2 gamma-glutamyltranspeptidase (NCBI ptt file) 0.67 SO3430 recA recA protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.55 Shewana3_2487 gamma-glutamyltransferase 1 (RefSeq) 0.67 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Marinobacter adhaerens HP15 0.52 HP15_1357 gamma-glutamyltranspeptidase periplasmic precursor 0.67 HP15_1048 recombinase A low > 73
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2377 gamma-glutamyltranspeptidase 0.71 B158DRAFT_1531 protein RecA low > 40
Ralstonia solanacearum PSI07 0.45 RPSI07_RS01100 gamma-glutamyltransferase 0.74 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS19795 gamma-glutamyltransferase 0.74 ABZR87_RS07965 recombinase RecA low > 80
Serratia liquefaciens MT49 0.45 IAI46_04820 gamma-glutamyltransferase 0.68 IAI46_03840 recombinase RecA low > 86
Sinorhizobium meliloti 1021 0.45 SM_b20585 gamma-glutamyltranspeptidase 0.70 SMc00760 recombinase A low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.68 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.68 Psyr_1378 RecA protein low > 86
Variovorax sp. OAS795 0.45 ABID97_RS09895 gamma-glutamyltransferase 0.74 ABID97_RS02275 recombinase RecA low > 91
Rhizobium sp. OAE497 0.45 ABIE40_RS16090 gamma-glutamyltransferase 0.70 ABIE40_RS10320 recombinase RecA low > 107
Rhodopseudomonas palustris CGA009 0.45 TX73_000130 gamma-glutamyltransferase 0.69 TX73_019940 recombinase RecA — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS13685 gamma-glutamyltransferase 0.68 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS13685 gamma-glutamyltransferase 0.68 PFLU_RS05885 recombinase RecA low > 109
Dickeya dianthicola ME23 0.45 DZA65_RS14700 gamma-glutamyltransferase 0.68 DZA65_RS17450 recombinase RecA — —
Ralstonia solanacearum GMI1000 0.45 RS_RS18475 gamma-glutamyltransferase 0.74 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum UW163 0.45 UW163_RS22625 gamma-glutamyltransferase 0.74 UW163_RS01625 recombinase RecA — —
Rahnella sp. WP5 0.45 EX31_RS22075 gamma-glutamyltransferase 0.68 EX31_RS07800 recombinase RecA low > 89
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS22085 gamma-glutamyltransferase 0.74 RALBFv3_RS12010 recombinase RecA low > 76
Pseudomonas simiae WCS417 0.45 PS417_13045 gamma-glutamyltranspeptidase 0.68 PS417_05815 recombinase RecA low > 88
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_2671 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.68 PfGW456L13_4668 RecA protein low > 87
Dickeya dianthicola 67-19 0.44 HGI48_RS14025 gamma-glutamyltransferase 0.68 HGI48_RS16355 recombinase RecA low > 71
Variovorax sp. SCN45 0.44 GFF3077 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) 0.74 GFF5390 RecA protein low > 127
Dickeya dadantii 3937 0.44 DDA3937_RS14030 gamma-glutamyltransferase 0.69 DDA3937_RS16245 recombinase RecA low > 74
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_22255 gamma-glutamyltranspeptidase 0.68 AO356_05670 recombinase RecA low > 104
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_313 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.68 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. RS175 0.44 PFR28_02593 Glutathione hydrolase proenzyme 0.68 PFR28_00472 Protein RecA low > 88
Pectobacterium carotovorum WPP14 0.44 HER17_RS00330 gamma-glutamyltransferase 0.69 HER17_RS05045 recombinase RecA low > 75
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_4081 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.67 Pf1N1B4_3143 RecA protein low > 87
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS17620 gamma-glutamyltransferase 0.59 CA265_RS00600 recombinase RecA low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_13180 gamma-glutamyltransferase 0.65 CA264_19695 DNA recombination/repair protein RecA — —
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_01035 gamma-glutamyltranspeptidase 0.66 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.40 CCNA_01035 gamma-glutamyltranspeptidase 0.66 CCNA_01141 RecA protein low > 66
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3948 gamma-glutamyltranspeptidase 0.60 Echvi_0044 protein RecA low > 79
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS14675 gamma-glutamyltransferase 0.77 QEN71_RS02335 recombinase RecA — —
Alteromonas macleodii MIT1002 0.36 MIT1002_00538 Gamma-glutamyltranspeptidase precursor 0.71 MIT1002_00955 Recombinase A low > 70
Pseudomonas putida KT2440 0.36 PP_4659 gamma-glutamyltranspeptidase 0.68 PP_1629 Protein RecA low > 96
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS21360 gamma-glutamyltranspeptidase 0.77 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_01608 gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 0.78 H281DRAFT_04208 RecA protein low > 103
Paraburkholderia graminis OAS925 0.35 ABIE53_004289 gamma-glutamyltranspeptidase/glutathione hydrolase 0.78 ABIE53_003448 recombination protein RecA low > 113
Lysobacter sp. OAE881 0.35 ABIE51_RS15105 gamma-glutamyltransferase 0.70 ABIE51_RS07800 recombinase RecA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2158.1 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.70 Xcc-8004.3111.1 RecA protein — —
Pseudomonas stutzeri RCH2 0.34 Psest_1413 gamma-glutamyltranspeptidase 0.70 Psest_2872 protein RecA low > 67
Rhodanobacter denitrificans MT42 0.32 LRK55_RS13100 gamma-glutamyltransferase 0.71 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13360 gamma-glutamyltransferase 0.71 LRK54_RS14980 recombinase RecA low > 59
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_02600 ggt gamma-glutamyltransferase 0.71 OKGIIK_03740 recA recombinase RecA low > 52
Bosea sp. OAE506 0.30 ABIE41_RS10575 gamma-glutamyltransferase 0.66 ABIE41_RS13335 recombinase RecA low > 77
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS20010 gamma-glutamyltransferase 0.68 ABZR86_RS00660 recombinase RecA low > 74
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_01035 gamma-glutamyltransferase 0.70 CSW01_02875 DNA recombination/repair protein RecA low > 62
Agrobacterium fabrum C58 0.28 Atu5507 gamma-glutamyltranspeptidase 0.69 Atu1874 RecA protein low > 89
Phaeobacter inhibens DSM 17395 0.25 PGA1_c28250 gamma-glutamyltranspeptidase Ggt 0.70 PGA1_c15260 protein recA (recombinase A) low > 62
Dinoroseobacter shibae DFL-12 0.25 Dshi_0675 gamma-glutamyltransferase (RefSeq) 0.65 Dshi_1643 recA protein (RefSeq) low > 64
Azospirillum brasilense Sp245 0.24 AZOBR_RS03085 gamma-glutamyltransferase 0.68 AZOBR_RS11095 recombinase RecA low > 97
Pseudomonas sp. S08-1 0.23 OH686_14140 gamma-glutamyltransferase 0.70 OH686_18205 protein RecA low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3824 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.74 GFF2500 RecA protein low > 90
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_14670 gamma-glutamyltransferase 0.68 AO353_16805 recombinase RecA low > 101
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS26175 gamma-glutamyltransferase 0.74 RR42_RS03080 recombinase RecA low > 128
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS14305 gamma-glutamyltransferase family protein 0.69 A4249_RS12615 recombinase RecA low > 48
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_3349 Gamma-glutamyltransferase 0.67 Ga0059261_0204 protein RecA low > 68
Magnetospirillum magneticum AMB-1 0.12 AMB_RS07035 gamma-glutamyltransferase 0.67 AMB_RS03205 DNA recombination/repair protein RecA low > 64

Not shown: 1 genomes with orthologs for HSERO_RS05455 only; 14 genomes with orthologs for HSERO_RS03270 only