| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_26685 | | hypothetical protein | 1.0 | PS417_04285 | | protease TldD | 0.26 | 18 |
| Pseudomonas fluorescens SBW25 | 0.98 | PFLU_RS28330 | | YqgE/AlgH family protein | 1.00 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.98 | PFLU_RS28330 | | YqgE/AlgH family protein | 1.00 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_4609 | | UPF0301 protein YqgE | 0.92 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_13465 | | hypothetical protein | 0.92 | AO356_07095 | | protease TldD | low | > 104 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_04234 | | hypothetical protein | 0.90 | PFR28_00161 | | Metalloprotease TldD | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_2350 | | UPF0301 protein YqgE | 0.92 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_1019 | | UPF0301 protein YqgE | 0.92 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.83 | AO353_08120 | | hypothetical protein | 0.92 | AO353_05215 | | protease TldD | low | > 101 |
| Pseudomonas putida KT2440 | 0.76 | PP_4995 | | putative protein possibly involved in the control of exopolysaccharide production | 0.88 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.75 | Psyr_0485 | | Protein of unknown function DUF179 | 0.91 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.75 | Psyr_0485 | | Protein of unknown function DUF179 | 0.91 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas sp. S08-1 | 0.73 | OH686_10925 | | UPF0301 protein YqgE | 0.82 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.68 | Psest_0294 | | Putative transcriptional regulator | 0.80 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS04220 | | hypothetical protein | 0.59 | BPHYT_RS03540 | | peptidase C69 | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_04814 | | putative transcriptional regulator | 0.59 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_001128 | | putative transcriptional regulator | 0.59 | ABIE53_000851 | | TldD protein | low | > 113 |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS12610 | | DUF179 domain-containing protein | 0.61 | RALBFv3_RS05455 | | metalloprotease TldD | low | > 76 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS00955 | | DUF179 domain-containing protein | 0.61 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS03395 | | YqgE/AlgH family protein | 0.61 | RS_RS13315 | | metalloprotease TldD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS15875 | | hypothetical protein | 0.62 | RR42_RS05875 | | protease TldD | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS20650 | | YqgE/AlgH family protein | 0.60 | RPSI07_RS11850 | | metalloprotease TldD | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS25795 | | YqgE/AlgH family protein | 0.58 | QEN71_RS26555 | | metalloprotease TldD | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS08610 | | YqgE/AlgH family protein | 0.61 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS10730 | | YqgE/AlgH family protein | 0.58 | ABCV34_RS02590 | | metalloprotease TldD | low | > 48 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS16025 | | YqgE/AlgH family protein | 0.64 | ABIE51_RS06795 | | metalloprotease TldD | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_03056 | | hypothetical protein | 0.63 | MIT1002_00227 | | protease TldD | low | > 70 |
| Dechlorosoma suillum PS | 0.43 | Dsui_0593 | | putative transcriptional regulator | 0.58 | Dsui_3401 | | putative Zn-dependent protease-like protein | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1720.1 | | UPF0301 protein YqgE | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS10380 | | YqgE/AlgH family protein | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | — | — |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS04505 | | YqgE/AlgH family protein | 0.52 | AMB_RS21030 | | metalloprotease TldD | low | > 64 |
| Azospirillum brasilense Sp245 | 0.41 | AZOBR_RS10525 | | hypothetical protein | 0.52 | AZOBR_RS10600 | | peptidase C69 | low | > 97 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS02630 | | YqgE/AlgH family protein | 0.63 | HER17_RS20140 | | metalloprotease TldD | low | > 75 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS24675 | | YqgE/AlgH family protein | 0.59 | ABID97_RS06335 | | metalloprotease TldD | low | > 91 |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS03980 | | YqgE/AlgH family protein | 0.62 | LRK55_RS03145 | | metalloprotease TldD | — | — |
| Agrobacterium fabrum C58 | 0.41 | Atu0781 | | hypothetical protein | 0.51 | Atu0765 | | TldD | low | > 89 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS04210 | | YqgE/AlgH family protein | 0.62 | LRK54_RS03395 | | metalloprotease TldD | low | > 59 |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS02315 | | transcriptional regulator | 0.58 | HSERO_RS07155 | | peptidase C69 | low | > 78 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_01077 | | hypothetical protein | 0.53 | MPMX19_00882 | | Metalloprotease TldD | low | > 112 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS18565 | | YqgE/AlgH family protein | 0.65 | DDA3937_RS01460 | | metalloprotease TldD | low | > 74 |
| Variovorax sp. SCN45 | 0.40 | GFF2157 | | UPF0301 protein YqgE | 0.58 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 127 |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_02485 | | YqgE/AlgH family protein | 0.62 | CSW01_02220 | | metalloprotease TldD | low | > 62 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS24080 | | DUF179 domain-containing protein | 0.64 | BWI76_RS25470 | | metalloprotease TldD | low | > 92 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_1200 | | hypothetical protein (RefSeq) | 0.65 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS19635 | | YqgE/AlgH family protein | 0.65 | DZA65_RS01440 | | metalloprotease TldD | low | > 75 |
| Serratia liquefaciens MT49 | 0.40 | IAI46_21395 | | YqgE/AlgH family protein | 0.66 | IAI46_22685 | | metalloprotease TldD | low | > 86 |
| Rhodopseudomonas palustris CGA009 | 0.40 | TX73_004710 | | YqgE/AlgH family protein | 0.51 | TX73_004255 | | metalloprotease TldD | low | > 86 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS18500 | | YqgE/AlgH family protein | 0.65 | HGI48_RS01380 | | metalloprotease TldD | low | > 71 |
| Rhodanobacter sp. FW510-T8 | 0.39 | OKGIIK_11085 | algH | YqgE/AlgH family protein | 0.64 | OKGIIK_10280 | tldD | metalloprotease TldD | low | > 52 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_3981 | | UPF0301 protein YqgE | 0.59 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 79 |
| Rhizobium sp. OAE497 | 0.39 | ABIE40_RS04185 | | YqgE/AlgH family protein | 0.52 | ABIE40_RS04050 | | metalloprotease TldD | 0.77 | 2 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS05475 | | YqgE/AlgH family protein | 0.63 | LU632_RS21420 | tldD | metalloprotease TldD | low | > 74 |
| Shewanella amazonensis SB2B | 0.39 | Sama_2472 | | putative transcriptional regulator (RefSeq) | 0.61 | Sama_0474 | | TldD protein (RefSeq) | low | > 62 |
| Rhodospirillum rubrum S1H | 0.39 | Rru_A3059 | | Protein of unknown function DUF179 (NCBI) | 0.54 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | low | > 58 |
| Escherichia coli ECRC101 | 0.39 | MCAODC_09790 | yqgE | YqgE/AlgH family protein | 0.64 | MCAODC_08275 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_22900 | yqgE | YqgE/AlgH family protein | 0.64 | JDDGAC_21380 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC62 | 0.39 | BNILDI_09720 | yqgE | YqgE/AlgH family protein | 0.64 | BNILDI_01980 | tldD | metalloprotease TldD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_00770 | | hypothetical protein | 0.64 | OHPLBJKB_00460 | | Metalloprotease TldD | low | > 73 |
| Escherichia coli BW25113 | 0.39 | b2948 | yqgE | orf, hypothetical protein (VIMSS) | 0.64 | b3244 | tldD | predicted peptidase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_18575 | yqgE | YqgE/AlgH family protein | 0.64 | HEPCGN_16620 | tldD | metalloprotease TldD | low | > 85 |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_17035 | yqgE | YqgE/AlgH family protein | 0.64 | NIAGMN_15515 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_08870 | algH | YqgE/AlgH family protein | 0.64 | KEDOAH_10395 | tldD | metalloprotease TldD | — | — |
| Escherichia coli BL21 | 0.39 | ECD_02778 | | uncharacterized protein | 0.64 | ECD_03104 | | putative peptidase | low | > 60 |
| Pantoea sp. MT58 | 0.39 | IAI47_03610 | | YqgE/AlgH family protein | 0.66 | IAI47_02465 | | metalloprotease TldD | low | > 76 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_11140 | yqgE | YqgE/AlgH family protein | 0.64 | NOLOHH_09555 | tldD | metalloprotease TldD | low | > 57 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS16400 | | YqgE/AlgH family protein | 0.64 | ECOLIN_RS18595 | | metalloprotease TldD | low | > 52 |
| Escherichia coli ECRC101 | 0.39 | OKFHMN_19270 | yqgE | YqgE/AlgH family protein | 0.64 | OKFHMN_17755 | tldD | metalloprotease TldD | — | — |
| Escherichia fergusonii Becca | 0.39 | EFB2_00954 | | hypothetical protein | 0.64 | EFB2_00586 | | Metalloprotease TldD | low | > 86 |
| Shewanella oneidensis MR-1 | 0.38 | SO3346 | | conserved hypothetical protein (NCBI ptt file) | 0.62 | SO4091 | tldD | tldD protein (NCBI ptt file) | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.38 | SMc00019 | | hypothetical protein | 0.51 | SMc00960 | | hypothetical protein | low | > 103 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF3050 | | UPF0301 protein YqgE | 0.64 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 78 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_2986 | | Putative transcriptional regulator | 0.63 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF648 | | UPF0301 protein YqgE | 0.58 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 90 |
| Enterobacter sp. TBS_079 | 0.37 | MPMX20_03806 | | hypothetical protein | 0.64 | MPMX20_04151 | | Metalloprotease TldD | low | > 85 |
| Shewanella loihica PV-4 | 0.37 | Shew_1144 | | hypothetical protein (RefSeq) | 0.64 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_0191 | | Putative transcriptional regulator | 0.62 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Phaeobacter inhibens DSM 17395 | 0.36 | PGA1_c03130 | | Putative transcriptional regulator | 0.48 | PGA1_c06240 | | protein TldD | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_3083 | | protein of unknown function DUF179 (RefSeq) | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | low | > 64 |
| Rahnella sp. WP5 | 0.35 | EX31_RS02670 | | YqgE/AlgH family protein | 0.63 | EX31_RS12265 | | metalloprotease TldD | low | > 89 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_03506 | | putative transcriptional regulator | 0.52 | CCNA_03522 | | Zn-dependent protease TldD | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_03506 | | putative transcriptional regulator | 0.52 | CCNA_03522 | | Zn-dependent protease TldD | low | > 67 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_4015 | | Putative transcriptional regulator | 0.52 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.29 | A4249_RS00260 | | YqgE/AlgH family protein | 0.49 | A4249_RS10860 | | metalloprotease TldD | low | > 48 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.21 | BT1078 | | putative transcriptional regulator (NCBI ptt file) | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
Not shown: 6 genomes with orthologs for PS417_26685 only; 5 genomes with orthologs for PS417_04285 only