Conservation of cofitness between GFF3853 and GFF4897 in Hydrogenophaga sp. GW460-11-11-14-LB1

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3853 DNA-binding protein HU-beta 1.0 GFF4897 Transcription elongation factor GreA 0.76 4
Variovorax sp. SCN45 0.86 GFF2853 DNA-binding protein HU-beta 0.85 GFF374 Transcription elongation factor GreA low > 127
Variovorax sp. OAS795 0.86 ABID97_RS10665 HU family DNA-binding protein 0.85 ABID97_RS17070 transcription elongation factor GreA — —
Acidovorax sp. GW101-3H11 0.85 Ac3H11_376 DNA-binding protein HU-beta 0.85 Ac3H11_437 Transcription elongation factor GreA low > 79
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS21970 HU family DNA-binding protein 0.82 QEN71_RS04785 transcription elongation factor GreA low > 153
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS09465 transcriptional regulator 0.79 BPHYT_RS14185 transcription elongation factor GreA low > 109
Paraburkholderia bryophila 376MFSha3.1 0.78 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.77 H281DRAFT_04404 GreA/GreB family elongation factor — —
Dechlorosoma suillum PS 0.78 Dsui_2199 bacterial nucleoid DNA-binding protein 0.75 Dsui_3063 transcription elongation factor GreA low > 51
Paraburkholderia graminis OAS925 0.78 ABIE53_002118 DNA-binding protein HU-beta 0.78 ABIE53_003003 transcription elongation factor GreA low > 113
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS12900 transcriptional regulator HU subunit alpha 0.73 HSERO_RS06930 transcription elongation factor GreA — —
Castellaniella sp019104865 MT123 0.70 ABCV34_RS06640 HU family DNA-binding protein 0.71 ABCV34_RS15540 transcription elongation factor GreA — —
Ralstonia solanacearum GMI1000 0.68 RS_RS08660 HU family DNA-binding protein 0.76 RS_RS07635 transcription elongation factor GreA — —
Ralstonia solanacearum UW163 0.68 UW163_RS14645 HU family DNA-binding protein 0.75 UW163_RS15495 transcription elongation factor GreA — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS01335 HU family DNA-binding protein 0.75 RALBFv3_RS02185 transcription elongation factor GreA — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS16140 HU family DNA-binding protein 0.76 RPSI07_RS15260 transcription elongation factor GreA — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein 0.55 B158DRAFT_0617 transcription elongation factor GreA low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4356 DNA-binding protein HU-beta 0.57 GFF2922 Transcription elongation factor GreA 0.62 27
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS12780 HU family DNA-binding protein 0.78 ABZR87_RS14135 transcription elongation factor GreA low > 80
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_09600 DNA-binding protein HU-beta 0.47 CSW01_03330 transcription elongation factor GreA low > 62
Serratia liquefaciens MT49 0.66 IAI46_05025 DNA-binding protein HU-beta 0.56 IAI46_01880 transcription elongation factor GreA low > 86
Escherichia coli Nissle 1917 0.66 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.58 ECOLIN_RS18320 transcription elongation factor GreA — —
Escherichia coli ECRC62 0.66 BNILDI_22665 hupB DNA-binding protein HU-beta 0.58 BNILDI_01690 greA transcription elongation factor GreA — —
Escherichia coli ECRC99 0.66 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.58 KEDOAH_10105 greA transcription elongation factor GreA — —
Escherichia coli ECRC98 0.66 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.58 JDDGAC_21670 greA transcription elongation factor GreA — —
Shewanella sp. ANA-3 0.66 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) 0.52 Shewana3_1017 transcription elongation factor GreA (RefSeq) — —
Escherichia coli ECOR38 0.66 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.58 HEPCGN_16920 greA transcription elongation factor GreA — —
Escherichia coli ECRC102 0.66 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.58 NIAGMN_15805 greA transcription elongation factor GreA — —
Escherichia coli ECRC101 0.66 MCAODC_27540 hupB DNA-binding protein HU-beta 0.58 MCAODC_08565 greA transcription elongation factor GreA — —
Shewanella oneidensis MR-1 0.66 SO1797 DNA-binding protein, HU family (NCBI ptt file) 0.52 SO1191 greA transcription elongation factor GreA (NCBI ptt file) — —
Escherichia coli ECRC101 0.66 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.58 OKFHMN_18045 greA transcription elongation factor GreA — —
Escherichia coli ECOR27 0.66 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.58 NOLOHH_09845 greA transcription elongation factor GreA — —
Shewanella amazonensis SB2B 0.65 Sama_1227 HU family DNA-binding protein (RefSeq) 0.50 Sama_0951 GreA/GreB family elongation factor (RefSeq) — —
Escherichia coli BL21 0.65 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.58 ECD_03046 transcript cleavage factor low > 60
Escherichia coli BW25113 0.65 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.58 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) low > 76
Escherichia fergusonii Becca 0.65 EFB2_03617 DNA-binding protein HU-beta 0.58 EFB2_00642 Transcription elongation factor GreA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03233 DNA-binding protein HU-beta 0.58 OHPLBJKB_00519 Transcription elongation factor GreA low > 73
Shewanella loihica PV-4 0.65 Shew_2505 histone family protein DNA-binding protein (RefSeq) 0.52 Shew_2837 transcription elongation factor GreA (RefSeq) — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.57 EX28DRAFT_3232 transcription elongation factor GreA low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS06540 DNA-binding protein HU-beta 0.57 BWI76_RS25160 transcription elongation factor GreA low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01031 DNA-binding protein HU-beta 0.57 MPMX20_04085 Transcription elongation factor GreA low > 85
Marinobacter adhaerens HP15 0.64 HP15_2182 histone-like bacterial DNA-binding protein 0.58 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain — —
Rahnella sp. WP5 0.64 EX31_RS22260 DNA-binding protein HU-beta 0.57 EX31_RS08595 transcription elongation factor GreA low > 89
Dickeya dadantii 3937 0.62 DDA3937_RS05655 DNA-binding protein HU-beta 0.59 DDA3937_RS03015 transcription elongation factor GreA — —
Dickeya dianthicola 67-19 0.62 HGI48_RS05700 DNA-binding protein HU-beta 0.57 HGI48_RS03185 transcription elongation factor GreA low > 71
Dickeya dianthicola ME23 0.62 DZA65_RS06025 DNA-binding protein HU-beta 0.57 DZA65_RS03180 transcription elongation factor GreA low > 75
Alteromonas macleodii MIT1002 0.62 MIT1002_02756 hypothetical protein 0.55 MIT1002_01468 Transcript cleavage factor GreA — —
Pectobacterium carotovorum WPP14 0.62 HER17_RS15835 DNA-binding protein HU-beta 0.58 HER17_RS18330 transcription elongation factor GreA — —
Erwinia tracheiphila SCR3 0.61 LU632_RS18330 hupB DNA-binding protein HU-beta 0.51 LU632_RS21165 greA transcription elongation factor GreA low > 74
Pantoea sp. MT58 0.61 IAI47_14640 DNA-binding protein HU-beta 0.57 IAI47_17080 transcription elongation factor GreA low > 76
Pseudomonas fluorescens SBW25 0.61 PFLU_RS19155 HU family DNA-binding protein 0.50 PFLU_RS25875 transcription elongation factor GreA — —
Pseudomonas sp. S08-1 0.61 OH686_03630 DNA-binding protein HU-beta 0.52 OH686_17085 Transcription elongation factor GreA — —
Pseudomonas simiae WCS417 0.61 PS417_17220 transcriptional regulator HU subunit alpha 0.49 PS417_24035 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_20190 DNA-binding protein HU 0.51 AO353_05625 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_2215 DNA-binding protein HU-beta 0.52 Pf6N2E2_3363 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_01735 DNA-binding protein HU 0.52 AO356_07475 transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS19155 HU family DNA-binding protein 0.50 PFLU_RS25875 transcription elongation factor GreA — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_2555 DNA-binding protein HU-beta 0.50 PfGW456L13_5098 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_3948 DNA-binding protein HU-beta 0.49 Pf1N1B4_1171 Transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.50 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.50 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas stutzeri RCH2 0.60 Psest_2284 Bacterial nucleoid DNA-binding protein 0.56 Psest_0969 transcription elongation factor GreA — —
Pseudomonas putida KT2440 0.59 PP_2303 DNA binding regulator, beta subunit B 0.48 PP_4722 Transcription elongation factor GreA — —
Magnetospirillum magneticum AMB-1 0.59 AMB_RS10215 HU family DNA-binding protein 0.55 AMB_RS03610 transcription elongation factor GreA — —
Acinetobacter radioresistens SK82 0.59 MPMX26_01331 DNA-binding protein HU-beta 0.57 MPMX26_00765 Transcription elongation factor GreA — —
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS16740 HU family DNA-binding protein 0.58 LRK54_RS18005 transcription elongation factor GreA 0.62 45
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_08025 himA integration host factor subunit alpha 0.59 OKGIIK_07290 greA transcription elongation factor GreA — —
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS07315 HU family DNA-binding protein 0.59 ABZR86_RS05595 transcription elongation factor GreA — —
Rhodanobacter denitrificans MT42 0.59 LRK55_RS16465 HU family DNA-binding protein 0.58 LRK55_RS17860 transcription elongation factor GreA — —
Azospirillum sp. SherDot2 0.59 MPMX19_01544 DNA-binding protein HU 0.56 MPMX19_02300 Transcription elongation factor GreA — —
Lysobacter sp. OAE881 0.58 ABIE51_RS14140 HU family DNA-binding protein 0.64 ABIE51_RS11610 transcription elongation factor GreA — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.49 DvMF_0383 greA transcription elongation factor GreA (RefSeq) 0.27 41
Sinorhizobium meliloti 1021 0.57 SMc01906 histone-like protein 0.52 SMc01218 transcription elongation factor GreA — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.48 DVU3245 greA transcription elongation factor GreA (TIGR) — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS07150 transcriptional regulator 0.58 AZOBR_RS12900 transcription elongation factor GreA — —
Rhodospirillum rubrum S1H 0.55 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.55 Rru_A2887 GreA/GreB family elongation factor (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_0103 Bacterial nucleoid DNA-binding protein 0.49 Ga0059261_0008 transcription elongation factor GreA — —
Agrobacterium fabrum C58 0.50 Atu1262 histone-like protein 0.53 Atu2182 transcription elongation facto — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS20390 DNA-binding protein 0.73 RR42_RS13505 transcription elongation factor GreA — —
Bacteroides thetaiotaomicron VPI-5482 0.46 BT2830 DNA-binding protein HU-beta (NCBI ptt file) 0.41 BT2565 transcription elongation factor greA (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.46 BACOVA_02078 DNA-binding protein HU 0.41 BACOVA_01643 prokaryotic transcription elongation factor, GreA/GreB domain protein low > 94
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS06620 HU family DNA-binding protein 0.43 ABI39_RS04145 transcription elongation factor GreA low > 72
Phocaeicola vulgatus CL09T03C04 0.45 HMPREF1058_RS10500 HU family DNA-binding protein 0.43 HMPREF1058_RS12565 transcription elongation factor GreA — —
Pseudomonas sp. RS175 0.45 PFR28_04473 DNA-binding protein HU-beta 0.54 PFR28_00078 Transcription elongation factor GreA — —
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS01105 HU family DNA-binding protein 0.42 HMPREF1181_RS00805 transcription elongation factor GreA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS16005 HU family DNA-binding protein 0.57 A4249_RS00695 transcription elongation factor GreA — —
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS11630 HU family DNA-binding protein 0.39 HMPREF1078_RS17725 transcription elongation factor GreA low > 61
Bosea sp. OAE506 0.35 ABIE41_RS21840 HU family DNA-binding protein 0.46 ABIE41_RS11905 transcription elongation factor GreA — —

Not shown: 1 genomes with orthologs for GFF3853 only; 12 genomes with orthologs for GFF4897 only