Conservation of cofitness between Psest_0532 and Psest_3934 in Pseudomonas stutzeri RCH2

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 1.0 Psest_3934 rRNA methylase, putative, group 2 0.30 8
Pseudomonas sp. S08-1 0.88 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.71 OH686_14675 tRNA (cytidine(34)-2'-O)-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.78 AO353_12135 rRNA methylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.78 Pf1N1B4_1613 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.78 Psyr_4881 RNA methyltransferase TrmH, group 2 low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.78 Psyr_4881 RNA methyltransferase TrmH, group 2 low > 86
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.78 AO356_09750 rRNA methylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.77 Pf6N2E2_3828 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 103
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.78 PfGW456L13_349 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 87
Pseudomonas sp. RS175 0.85 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.78 PFR28_04942 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 low > 88
Pseudomonas simiae WCS417 0.85 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.78 PS417_01625 rRNA methylase
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.75 PFLU_RS01675 tRNA (cytidine(34)-2'-O)-methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.75 PFLU_RS01675 tRNA (cytidine(34)-2'-O)-methyltransferase low > 109
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.57 B158DRAFT_0713 rRNA methylase, putative, group 2 low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.64 GFF408 'tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)' transl_table=11 low > 78
Escherichia coli ECRC101 0.69 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 MCAODC_06275 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Klebsiella michiganensis M5al 0.69 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 BWI76_RS27200 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
Escherichia coli BL21 0.69 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.62 ECD_03464 tRNA Leu mC34,mU34 2'-O-methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR27 0.69 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 NOLOHH_07645 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL low > 57
Escherichia coli ECRC101 0.69 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 OKFHMN_15765 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Escherichia coli ECRC99 0.69 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 KEDOAH_12385 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 OHPLBJKB_00093 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 low > 73
Escherichia coli BW25113 0.69 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.62 b3606 yibK predicted rRNA methylase (NCBI) low > 76
Escherichia fergusonii Becca 0.69 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 EFB2_00204 tRNA (cytidine(34)-2'-O)-methyltransferase low > 86
Escherichia coli ECRC102 0.69 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 NIAGMN_13525 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Escherichia coli ECRC98 0.69 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 JDDGAC_19390 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Escherichia coli ECOR38 0.69 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 HEPCGN_14605 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL low > 85
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 ABZR86_RS13445 tRNA (cytidine(34)-2'-O)-methyltransferase low > 74
Escherichia coli ECRC62 0.69 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 BNILDI_03870 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Escherichia coli Nissle 1917 0.69 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 ECOLIN_RS20585 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
Pectobacterium carotovorum WPP14 0.69 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 HER17_RS00645 tRNA (cytidine(34)-2'-O)-methyltransferase low > 75
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.64 OKGIIK_13255 tRNA (cytidine(34)-2'-O)-methyltransferase low > 52
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.61 Xcc-8004.277.1 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 74
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 LRK55_RS10285 tRNA (cytidine(34)-2'-O)-methyltransferase low > 63
Pantoea sp. MT58 0.68 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.61 IAI47_00750 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 76
Shewanella amazonensis SB2B 0.68 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.61 Sama_3440 RNA methyltransferase TrmH, group 2 (RefSeq) low > 62
Shewanella sp. ANA-3 0.68 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.57 Shewana3_3934 RNA methyltransferase (RefSeq) low > 73
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 LRK54_RS10645 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 59
Erwinia tracheiphila SCR3 0.68 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.59 LU632_RS21865 trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 74
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.62 EX28DRAFT_3857 tRNA (cytidine(34)-2'-O)-methyltransferase low > 76
Shewanella oneidensis MR-1 0.68 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.58 SO4529 RNA methyltransferase, TrmH family, group 2 (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.68 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.61 MIT1002_00480 tRNA (cytidine(34)-2'-O)-methyltransferase low > 70
Dickeya dianthicola 67-19 0.68 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 HGI48_RS20615 tRNA (cytidine(34)-2'-O)-methyltransferase low > 71
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 DDA3937_RS00755 tRNA (cytidine(34)-2'-O)-methyltransferase low > 74
Serratia liquefaciens MT49 0.67 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.64 IAI46_24670 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 86
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 DZA65_RS21630 tRNA (cytidine(34)-2'-O)-methyltransferase low > 75
Shewanella loihica PV-4 0.67 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.53 Shew_3577 RNA methyltransferase (RefSeq) low > 60
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 ABIE51_RS00285 tRNA (cytidine(34)-2'-O)-methyltransferase low > 62
Enterobacter sp. TBS_079 0.67 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 MPMX20_00127 tRNA (cytidine(34)-2'-O)-methyltransferase low > 85
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 CSW01_13605 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 62
Rahnella sp. WP5 0.66 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 EX31_RS14330 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 89
Dechlorosoma suillum PS 0.65 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.59 Dsui_1278 putative rRNA methylase SpoU family low > 51
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.64 QEN71_RS01475 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 153
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.64 BPHYT_RS02620 tRNA methyltransferase low > 109
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.55 ABCV34_RS14245 tRNA (cytidine(34)-2'-O)-methyltransferase low > 48
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.63 H281DRAFT_01998 tRNA (cytidine/uridine-2'-O-)-methyltransferase low > 103
Ralstonia solanacearum PSI07 0.63 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 RPSI07_RS22385 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 RS_RS01765 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 80
Acinetobacter radioresistens SK82 0.62 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.58 MPMX26_00707 tRNA (cytidine(34)-2'-O)-methyltransferase low > 36
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 ABZR87_RS06775 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 80
Ralstonia solanacearum UW163 0.62 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 UW163_RS02655 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.63 RALBFv3_RS10925 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.62 RR42_RS01855 rRNA methylase low > 128
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 0.60 HSERO_RS20815 tRNA methyltransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF613 tRNA-i(6)A37 methylthiotransferase 0.60 GFF684 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.59 Ac3H11_3896 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 79
Variovorax sp. SCN45 0.60 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.61 GFF2293 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) low > 127
Variovorax sp. OAS795 0.60 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 ABID97_RS23985 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 91
Bosea sp. OAE506 0.46 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 ABIE41_RS11180 TrmH family RNA methyltransferase low > 77
Azospirillum brasilense Sp245 0.46 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.35 AZOBR_RS20740 tRNA methyltransferase low > 97
Magnetospirillum magneticum AMB-1 0.45 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.27 AMB_RS20670 tRNA (cytidine(34)-2'-O)-methyltransferase low > 64
Sinorhizobium meliloti 1021 0.45 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.31 SMc00184 tRNA/rRNA methyltransferase low > 103
Caulobacter crescentus NA1000 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.38 CCNA_00504 23S rRNA methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.38 CCNA_00504 23S rRNA methyltransferase low > 67
Rhizobium sp. OAE497 0.44 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.31 ABIE40_RS13160 tRNA (cytidine(34)-2'-O)-methyltransferase low > 107
Agrobacterium fabrum C58 0.44 Atu0356 miaB protein 0.32 Atu2244 tRNA/rRNA methyltransferase low > 89
Rhodospirillum rubrum S1H 0.43 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.35 Rru_A0365 tRNA/rRNA methyltransferase (SpoU) (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.42 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.31 TX73_006115 tRNA (cytidine(34)-2'-O)-methyltransferase low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.36 A4249_RS02555 tRNA (cytidine(34)-2'-O)-methyltransferase low > 48
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.32 Ga0059261_3218 Predicted rRNA methylase (SpoU class) low > 68
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.39 Synpcc7942_1874 RNA methyltransferase TrmH, group 2 low > 38
Mycobacterium tuberculosis H37Rv 0.36 Rv2733c Conserved hypothetical alanine, arginine-rich protein 0.48 Rv3366 Probable tRNA/rRNA methylase SpoU (tRNA/rRNA methyltransferase) low > 58
Fusobacterium nucleatum SB010 0.34 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 HUW76_06985 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) 0.39 DVU2238 RNA methyltransferase, TrmH family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) 0.39 DvMF_0834 tRNA/rRNA methyltransferase (SpoU) (RefSeq) low > 51

Not shown: 17 genomes with orthologs for Psest_0532 only; 2 genomes with orthologs for Psest_3934 only