Conservation of cofitness between GFF2390 and GFF3049 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 1.0 GFF3049 Glutathione synthetase (EC 6.3.2.3) 0.85 6
Escherichia coli ECOR38 0.90 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 HEPCGN_18580 gshB glutathione synthase low > 87
Escherichia coli ECOR27 0.90 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 NOLOHH_11145 gshB glutathione synthase low > 75
Escherichia coli ECRC62 0.90 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 BNILDI_09725 gshB glutathione synthase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.92 OHPLBJKB_00771 Glutathione synthetase low > 73
Escherichia coli BW25113 0.90 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.92 b2947 gshB glutathione synthetase (NCBI) 0.28 54
Escherichia coli ECRC102 0.90 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 NIAGMN_17040 gshB glutathione synthase — —
Escherichia coli BL21 0.90 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.92 ECD_02777 glutathione synthetase low > 61
Escherichia coli ECRC100 0.90 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 OKFHMN_19275 gshB glutathione synthase low > 80
Escherichia coli ECRC98 0.90 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 JDDGAC_22905 gshB glutathione synthase low > 86
Escherichia coli ECRC99 0.90 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 KEDOAH_08865 gshB glutathione synthase — —
Escherichia coli ECRC101 0.90 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.92 MCAODC_09795 gshB glutathione synthase low > 87
Escherichia fergusonii Becca 0.90 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.94 EFB2_00955 Glutathione synthetase low > 86
Escherichia coli Nissle 1917 0.90 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.94 ECOLIN_RS16395 glutathione synthase — —
Klebsiella michiganensis M5al 0.88 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.93 BWI76_RS24075 glutathione synthase low > 92
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.94 EX28DRAFT_2985 glutathione synthase (EC 6.3.2.3) low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.95 MPMX20_03805 Glutathione synthetase 0.36 29
Serratia liquefaciens MT49 0.74 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.83 IAI46_21390 glutathione synthase low > 86
Dickeya dianthicola ME23 0.71 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.83 DZA65_RS19630 glutathione synthase low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.83 HGI48_RS18495 glutathione synthase low > 71
Pantoea sp. MT58 0.71 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.85 IAI47_03615 glutathione synthase low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.82 DDA3937_RS18560 glutathione synthase low > 74
Rahnella sp. WP5 0.71 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.84 EX31_RS02665 glutathione synthase low > 89
Pectobacterium carotovorum WPP14 0.71 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.82 HER17_RS02635 glutathione synthase 0.69 18
Erwinia tracheiphila SCR3 0.70 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 LU632_RS05480 gshB glutathione synthase — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.77 CSW01_02490 glutathione synthetase low > 62
Shewanella amazonensis SB2B 0.49 Sama_0041 sun protein (RefSeq) 0.73 Sama_0574 glutathione synthetase (RefSeq) low > 62
Shewanella loihica PV-4 0.49 Shew_3738 sun protein (RefSeq) 0.73 Shew_3225 glutathione synthetase (RefSeq) low > 60
Shewanella sp. ANA-3 0.49 Shewana3_0033 sun protein (RefSeq) 0.74 Shewana3_3445 glutathione synthetase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.49 SO0030 sun sun protein (NCBI ptt file) 0.72 SO0831 gshB glutathione synthetase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.62 MIT1002_03055 Glutathione synthetase low > 70
Pseudomonas stutzeri RCH2 0.43 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.61 Psest_0296 glutathione synthetase, prokaryotic low > 67
Pseudomonas sp. S08-1 0.41 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.64 OH686_10915 glutathione synthase low > 80
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 Pf6N2E2_4612 Glutathione synthetase (EC 6.3.2.3) low > 103
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.64 AO353_08110 glutathione synthetase low > 101
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_11275 16S rRNA methyltransferase 0.65 AO356_13475 glutathione synthetase low > 104
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 Pf1N1B4_2352 Glutathione synthetase (EC 6.3.2.3) low > 87
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.66 Psyr_0487 glutathione synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.66 Psyr_0487 glutathione synthase low > 86
Marinobacter adhaerens HP15 0.41 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.64 HP15_3512 glutathione synthetase low > 73
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.65 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.65 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas sp. RS175 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.64 PFR28_04232 Glutathione synthetase low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 PfGW456L13_1021 Glutathione synthetase (EC 6.3.2.3) low > 87
Pseudomonas simiae WCS417 0.40 PS417_00085 16S rRNA methyltransferase 0.65 PS417_26675 glutathione synthetase — —
Pseudomonas putida KT2440 0.40 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.65 PP_4993 Glutathione synthetase low > 96
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB 0.60 B158DRAFT_0189 glutathione synthase (EC 6.3.2.3) — —
Lysobacter sp. OAE881 0.35 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.57 ABIE51_RS05210 glutathione synthase — —
Dechlorosoma suillum PS 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.47 Dsui_0746 glutathione synthetase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4741.1 hypothetical protein 0.56 Xcc-8004.1501.1 Glutathione synthetase (EC 6.3.2.3) — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 OKGIIK_11075 gshB glutathione synthase low > 52
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 ABZR86_RS10370 glutathione synthase — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 RPSI07_RS22450 glutathione synthase low > 81
Acinetobacter radioresistens SK82 0.32 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.56 MPMX26_02936 Glutathione synthetase low > 36
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 ABZR87_RS06710 glutathione synthase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.47 H281DRAFT_02010 glutathione synthase low > 103
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 QEN71_RS01415 glutathione synthase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.48 GFF2650 Glutathione synthetase (EC 6.3.2.3) low > 90
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS01475 16S rRNA methyltransferase 0.47 BPHYT_RS02560 glutathione synthetase low > 109
Ralstonia solanacearum GMI1000 0.30 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 RS_RS01700 glutathione synthetase low > 80
Paraburkholderia graminis OAS925 0.30 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.48 ABIE53_000657 glutathione synthase low > 113
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 ABCV34_RS04795 glutathione synthase low > 48
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 LRK54_RS04200 glutathione synthase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.48 RALBFv3_RS10860 glutathione synthase low > 76
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 LRK55_RS03970 glutathione synthase — —
Ralstonia solanacearum UW163 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.48 UW163_RS02720 glutathione synthase — —
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS20450 16S rRNA methyltransferase 0.45 RR42_RS01780 glutathione synthetase low > 128
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS00355 methyltransferase 0.48 HSERO_RS00435 glutathione synthetase low > 78
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0962 sun sun protein 0.38 Synpcc7942_2324 gshB glutathione synthetase low > 38
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.47 Ac3H11_711 Glutathione synthetase (EC 6.3.2.3) low > 79
Variovorax sp. SCN45 0.25 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.46 GFF6322 Glutathione synthetase (EC 6.3.2.3) low > 127
Variovorax sp. OAS795 0.24 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.48 ABID97_RS04630 glutathione synthase low > 91
Rhodopseudomonas palustris CGA009 0.22 TX73_000155 transcription antitermination factor NusB 0.37 TX73_001670 glutathione synthase — —
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.37 CCNA_00140 glutathione synthetase — —
Caulobacter crescentus NA1000 0.22 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.37 CCNA_00140 glutathione synthetase — —
Azospirillum sp. SherDot2 0.22 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.41 MPMX19_02474 Glutathione synthetase — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS00235 MFS transporter 0.41 AZOBR_RS02170 glutathione synthetase low > 97
Bosea sp. OAE506 0.22 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.37 ABIE41_RS03330 glutathione synthase — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS00745 MFS transporter 0.41 AMB_RS22800 glutathione synthase low > 64
Rhodospirillum rubrum S1H 0.21 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) 0.41 Rru_A3690 Glutathione synthetase (NCBI) — —
Agrobacterium fabrum C58 0.21 Atu2825 Sun protein 0.38 Atu0310 glutathione synthetase — —
Rhizobium sp. OAE497 0.21 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.39 ABIE40_RS01405 glutathione synthase low > 107
Dinoroseobacter shibae DFL-12 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.37 Dshi_2829 glutathione synthetase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.40 PGA1_c26710 glutathione synthetase GshB — —
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases 0.37 Ga0059261_2757 glutathione synthase (EC 6.3.2.3) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.39 A4249_RS14140 glutathione synthase — —

Not shown: 4 genomes with orthologs for GFF2390 only; 2 genomes with orthologs for GFF3049 only