Conservation of cofitness between Psest_2285 and Psest_1653 in Pseudomonas stutzeri RCH2

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2285 ATP-dependent protease La 1.0 Psest_1653 transcription-repair coupling factor (mfd) 0.31 8
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.85 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas sp. RS175 0.91 PFR28_01230 Lon protease 0.86 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_01740 DNA-binding protein 0.86 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.86 Pf6N2E2_2278 Transcription-repair coupling factor — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_20185 DNA-binding protein 0.86 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.85 Pf1N1B4_3916 Transcription-repair coupling factor — —
Pseudomonas simiae WCS417 0.90 PS417_17225 DNA-binding protein 0.85 PS417_07635 transcription-repair coupling factor — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS19160 endopeptidase La 0.85 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS19160 endopeptidase La 0.85 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas sp. S08-1 0.90 OH686_03635 endopeptidase La 0.88 OH686_21990 transcription-repair coupling factor 0.72 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.85 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.85 Psyr_1896 transcription-repair coupling factor 0.50 24
Pseudomonas putida KT2440 0.88 PP_2302 DNA-binding, ATP-dependent protease 0.83 PP_2148 transcription-repair coupling factor low > 96
Marinobacter adhaerens HP15 0.71 HP15_2183 DNA-binding ATP-dependent protease La 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Shewanella loihica PV-4 0.70 Shew_2506 ATP-dependent protease La (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) — —
Shewanella sp. ANA-3 0.70 Shewana3_2659 Lon-A peptidase (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) — —
Shewanella oneidensis MR-1 0.70 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS05650 endopeptidase La 0.56 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola ME23 0.69 DZA65_RS06020 endopeptidase La 0.56 DZA65_RS13530 transcription-repair coupling factor 0.75 21
Dickeya dianthicola 67-19 0.69 HGI48_RS05695 endopeptidase La 0.56 HGI48_RS13065 transcription-repair coupling factor low > 71
Klebsiella michiganensis M5al 0.69 BWI76_RS06535 endopeptidase La 0.56 BWI76_RS11205 transcription-repair coupling factor low > 92
Serratia liquefaciens MT49 0.69 IAI46_05020 endopeptidase La 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Pectobacterium carotovorum WPP14 0.69 HER17_RS15840 endopeptidase La 0.56 HER17_RS08775 transcription-repair coupling factor — —
Rahnella sp. WP5 0.69 EX31_RS22255 endopeptidase La 0.56 EX31_RS24520 transcription-repair coupling factor low > 89
Shewanella amazonensis SB2B 0.69 Sama_1226 endopeptidase La (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Enterobacter sp. TBS_079 0.68 MPMX20_01030 Lon protease 0.56 MPMX20_01795 Transcription-repair-coupling factor low > 85
Erwinia tracheiphila SCR3 0.68 LU632_RS18335 lon endopeptidase La 0.55 LU632_RS14730 mfd transcription-repair coupling factor — —
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2531 endopeptidase La 0.56 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_09605 endopeptidase La 0.57 CSW01_09445 transcription-repair coupling factor low > 62
Pantoea sp. MT58 0.68 IAI47_14645 endopeptidase La 0.56 IAI47_11975 transcription-repair coupling factor — —
Escherichia coli BW25113 0.68 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.56 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli BL21 0.68 ECD_00391 DNA-binding ATP-dependent protease La 0.56 ECD_01110 transcription-repair coupling factor low > 60
Alteromonas macleodii MIT1002 0.68 MIT1002_02757 Lon protease 0.56 MIT1002_01646 Transcription-repair-coupling factor low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.56 GFF3397 Transcription-repair coupling factor low > 78
Escherichia coli ECOR27 0.68 NOLOHH_01255 lon_P403L Lon protease 0.56 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Escherichia coli ECOR38 0.68 HEPCGN_06935 lon_P403L Lon protease 0.56 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_03234 Lon protease 0.56 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECRC62 0.68 BNILDI_22670 lon_P403L Lon protease 0.56 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia fergusonii Becca 0.68 EFB2_03618 Lon protease 0.56 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC99 0.68 KEDOAH_19645 Lon protease 0.56 KEDOAH_24285 mfd transcription-repair coupling factor — —
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS12785 endopeptidase La 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Escherichia coli ECRC101 0.68 OKFHMN_08320 Lon protease 0.56 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.68 MCAODC_27545 Lon protease 0.56 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 0.68 JDDGAC_11975 Lon protease 0.56 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.68 NIAGMN_06375 Lon protease 0.56 NIAGMN_24360 mfd transcription-repair coupling factor — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS01340 endopeptidase La 0.49 RALBFv3_RS01445 transcription-repair coupling factor — —
Ralstonia solanacearum UW163 0.67 UW163_RS14650 endopeptidase La 0.49 UW163_RS14755 transcription-repair coupling factor — —
Ralstonia solanacearum GMI1000 0.67 RS_RS08655 endopeptidase La 0.49 RS_RS08275 transcription-repair coupling factor — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS16135 endopeptidase La 0.49 RPSI07_RS16040 transcription-repair coupling factor — —
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS21975 endopeptidase La 0.50 QEN71_RS22060 transcription-repair coupling factor low > 153
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1038 ATP-dependent protease La 0.55 B158DRAFT_1800 transcription-repair coupling factor 0.65 34
Lysobacter sp. OAE881 0.66 ABIE51_RS14145 endopeptidase La 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08030 lon endopeptidase La 0.55 OKGIIK_09105 mfd transcription-repair coupling factor 0.72 28
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS07320 endopeptidase La 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.50 H281DRAFT_00880 transcription-repair coupling factor — —
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16460 endopeptidase La 0.56 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16735 endopeptidase La 0.56 LRK54_RS02040 transcription-repair coupling factor low > 59
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS09460 peptidase 0.50 BPHYT_RS09290 helicase — —
Dechlorosoma suillum PS 0.66 Dsui_2198 ATP-dependent protease La 0.49 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS09030 DNA-binding protein 0.49 RR42_RS07845 transcription-repair coupling factor — —
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS12905 peptidase 0.50 HSERO_RS15180 transcription-repair coupling factor — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 GFF4934 Transcription-repair coupling factor low > 90
Acidovorax sp. GW101-3H11 0.65 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 Ac3H11_328 Transcription-repair coupling factor low > 79
Castellaniella sp019104865 MT123 0.65 ABCV34_RS05125 endopeptidase La 0.47 ABCV34_RS08660 transcription-repair coupling factor — —
Paraburkholderia graminis OAS925 0.64 ABIE53_002117 ATP-dependent Lon protease 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Variovorax sp. OAS795 0.64 ABID97_RS17590 endopeptidase La 0.49 ABID97_RS17285 transcription-repair coupling factor low > 91
Azospirillum sp. SherDot2 0.63 MPMX19_01545 Lon protease 0.33 MPMX19_00876 Transcription-repair-coupling factor low > 112
Variovorax sp. SCN45 0.63 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 GFF412 Transcription-repair coupling factor low > 127
Magnetospirillum magneticum AMB-1 0.63 AMB_RS14035 endopeptidase La 0.34 AMB_RS12390 transcription-repair coupling factor low > 64
Rhodospirillum rubrum S1H 0.62 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Caulobacter crescentus NA1000 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.35 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.35 CCNA_01920 transcription-repair coupling factor Mfd — —
Rhodopseudomonas palustris CGA009 0.61 TX73_015345 endopeptidase La 0.33 TX73_013805 transcription-repair coupling factor — —
Rhizobium sp. OAE497 0.61 ABIE40_RS07100 endopeptidase La 0.33 ABIE40_RS09310 transcription-repair coupling factor — —
Sinorhizobium meliloti 1021 0.61 SMc01905 ATP-dependent protease LA protein 0.34 SMc04450 transcription-repair coupling factor — —
Agrobacterium fabrum C58 0.60 Atu1261 ATP-dependent protease LA 0.34 Atu1778 transcription-repair coupling factor — —
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS06460 endopeptidase La 0.34 A4249_RS04775 transcription-repair coupling factor — —
Phaeobacter inhibens DSM 17395 0.59 PGA1_c20540 ATP-dependent protease La 0.34 PGA1_c14920 transcription-repair-coupling factor Mfd — —
Bosea sp. OAE506 0.59 ABIE41_RS18050 endopeptidase La 0.32 ABIE41_RS15825 transcription-repair coupling factor — —
Dinoroseobacter shibae DFL-12 0.59 Dshi_1777 ATP-dependent protease La (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_0102 endopeptidase La 0.34 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Acinetobacter radioresistens SK82 0.55 MPMX26_02299 Lon protease 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0112 ATP-dependent protease La (RefSeq) 0.26 DvMF_0285 transcription-repair coupling factor (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1337 lon ATP-dependent protease La (TIGR) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) low > 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_00045 endopeptidase La 0.24 CA264_15820 transcription-repair coupling factor low > 74

Not shown: 11 genomes with orthologs for Psest_2285 only; 2 genomes with orthologs for Psest_1653 only