| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_2385 | | transcription-repair coupling factor Mfd | 1.0 | Dsui_3401 | | putative Zn-dependent protease-like protein | 0.79 | 15 |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS07845 | | transcription-repair coupling factor | 0.69 | RR42_RS05875 | | protease TldD | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS13240 | | transcription-repair coupling factor | 0.67 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS15180 | | transcription-repair coupling factor | 0.68 | HSERO_RS07155 | | peptidase C69 | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002095 | | transcription-repair coupling factor (superfamily II helicase) | 0.69 | ABIE53_000851 | | TldD protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.64 | H281DRAFT_00880 | | transcription-repair coupling factor | 0.69 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS01445 | | transcription-repair coupling factor | 0.68 | RALBFv3_RS05455 | | metalloprotease TldD | low | > 76 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS14755 | | transcription-repair coupling factor | 0.68 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS08275 | | transcription-repair coupling factor | 0.68 | RS_RS13315 | | metalloprotease TldD | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS09290 | | helicase | 0.69 | BPHYT_RS03540 | | peptidase C69 | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS22060 | | transcription-repair coupling factor | 0.68 | QEN71_RS26555 | | metalloprotease TldD | 0.58 | 50 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS16040 | | transcription-repair coupling factor | 0.68 | RPSI07_RS11850 | | metalloprotease TldD | low | > 81 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS17285 | | transcription-repair coupling factor | 0.69 | ABID97_RS06335 | | metalloprotease TldD | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF4934 | | Transcription-repair coupling factor | 0.70 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_328 | | Transcription-repair coupling factor | 0.70 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 79 |
| Variovorax sp. SCN45 | 0.59 | GFF412 | | Transcription-repair coupling factor | 0.70 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS08660 | | transcription-repair coupling factor | 0.67 | ABCV34_RS02590 | | metalloprotease TldD | low | > 48 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_1653 | | transcription-repair coupling factor (mfd) | 0.58 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_2278 | | Transcription-repair coupling factor | 0.58 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_21990 | | transcription-repair coupling factor | 0.58 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_02270 | | transcription-repair coupling factor | 0.59 | AO356_07095 | | protease TldD | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_00435 | | transcription-repair coupling factor | 0.59 | AO353_05215 | | protease TldD | low | > 101 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_01123 | | Transcription-repair-coupling factor | 0.57 | PFR28_00161 | | Metalloprotease TldD | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_1896 | | transcription-repair coupling factor | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_1896 | | transcription-repair coupling factor | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_07635 | | transcription-repair coupling factor | 0.58 | PS417_04285 | | protease TldD | 0.34 | 7 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_4027 | | Transcription-repair coupling factor | 0.59 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_3916 | | Transcription-repair coupling factor | 0.58 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.29 | 76 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS07710 | | transcription-repair coupling factor | 0.58 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS07710 | | transcription-repair coupling factor | 0.58 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01646 | | Transcription-repair-coupling factor | 0.62 | MIT1002_00227 | | protease TldD | low | > 70 |
| Pseudomonas putida KT2440 | 0.46 | PP_2148 | | transcription-repair coupling factor | 0.61 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | low | > 96 |
| Kangiella aquimarina DSM 16071 | 0.46 | B158DRAFT_1800 | | transcription-repair coupling factor | 0.56 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS02040 | | transcription-repair coupling factor | 0.62 | LRK54_RS03395 | | metalloprotease TldD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS01815 | | transcription-repair coupling factor | 0.62 | LRK55_RS03145 | | metalloprotease TldD | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21210 | | transcription-repair coupling factor | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_09445 | | transcription-repair coupling factor | 0.57 | CSW01_02220 | | metalloprotease TldD | low | > 62 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2289 | | transcription-repair coupling factor (RefSeq) | 0.61 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_09105 | mfd | transcription-repair coupling factor | 0.62 | OKGIIK_10280 | tldD | metalloprotease TldD | low | > 52 |
| Shewanella oneidensis MR-1 | 0.44 | SO2255 | mfd | transcription-repair coupling factor (NCBI ptt file) | 0.59 | SO4091 | tldD | tldD protein (NCBI ptt file) | low | > 76 |
| Pantoea sp. MT58 | 0.44 | IAI47_11975 | | transcription-repair coupling factor | 0.59 | IAI47_02465 | | metalloprotease TldD | 0.64 | 2 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_24015 | mfd | transcription-repair coupling factor | 0.57 | HEPCGN_16620 | tldD | metalloprotease TldD | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_02552 | | Transcription-repair-coupling factor | 0.57 | OHPLBJKB_00460 | | Metalloprotease TldD | low | > 73 |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_24360 | mfd | transcription-repair coupling factor | 0.57 | NIAGMN_15515 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_20995 | mfd | transcription-repair coupling factor | 0.57 | NOLOHH_09555 | tldD | metalloprotease TldD | low | > 57 |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_07130 | mfd | transcription-repair coupling factor | 0.57 | JDDGAC_21380 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC101 | 0.44 | OKFHMN_03470 | mfd | transcription-repair coupling factor | 0.57 | OKFHMN_17755 | tldD | metalloprotease TldD | — | — |
| Escherichia fergusonii Becca | 0.44 | EFB2_02861 | | Transcription-repair-coupling factor | 0.57 | EFB2_00586 | | Metalloprotease TldD | low | > 86 |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_24285 | mfd | transcription-repair coupling factor | 0.57 | KEDOAH_10395 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC101 | 0.44 | MCAODC_22830 | mfd | transcription-repair coupling factor | 0.57 | MCAODC_08275 | tldD | metalloprotease TldD | — | — |
| Escherichia coli BW25113 | 0.44 | b1114 | mfd | transcription-repair coupling factor (NCBI) | 0.57 | b3244 | tldD | predicted peptidase (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.44 | BNILDI_19160 | mfd | transcription-repair coupling factor | 0.57 | BNILDI_01980 | tldD | metalloprotease TldD | — | — |
| Escherichia coli BL21 | 0.44 | ECD_01110 | | transcription-repair coupling factor | 0.57 | ECD_03104 | | putative peptidase | low | > 60 |
| Shewanella amazonensis SB2B | 0.43 | Sama_1330 | | transcription-repair coupling factor (RefSeq) | 0.58 | Sama_0474 | | TldD protein (RefSeq) | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS08775 | | transcription-repair coupling factor | 0.59 | HER17_RS20140 | | metalloprotease TldD | low | > 75 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_1816 | | transcription-repair coupling factor (mfd) | 0.57 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF3397 | | Transcription-repair coupling factor | 0.57 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 78 |
| Shewanella loihica PV-4 | 0.43 | Shew_1630 | | transcription-repair coupling factor (RefSeq) | 0.60 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01795 | | Transcription-repair-coupling factor | 0.57 | MPMX20_04151 | | Metalloprotease TldD | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS14730 | mfd | transcription-repair coupling factor | 0.57 | LU632_RS21420 | tldD | metalloprotease TldD | low | > 74 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS11205 | | transcription-repair coupling factor | 0.57 | BWI76_RS25470 | | metalloprotease TldD | low | > 92 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS14320 | | transcription-repair coupling factor | 0.60 | ABIE51_RS06795 | | metalloprotease TldD | low | > 62 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS13000 | | transcription-repair coupling factor | 0.58 | DDA3937_RS01460 | | metalloprotease TldD | 0.81 | 1 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS13065 | | transcription-repair coupling factor | 0.58 | HGI48_RS01380 | | metalloprotease TldD | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS13530 | | transcription-repair coupling factor | 0.57 | DZA65_RS01440 | | metalloprotease TldD | low | > 75 |
| Rahnella sp. WP5 | 0.42 | EX31_RS24520 | | transcription-repair coupling factor | 0.56 | EX31_RS12265 | | metalloprotease TldD | low | > 89 |
| Serratia liquefaciens MT49 | 0.42 | IAI46_10320 | | transcription-repair coupling factor | 0.59 | IAI46_22685 | | metalloprotease TldD | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1775.1 | | Transcription-repair coupling factor | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_01920 | | transcription-repair coupling factor Mfd | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_01920 | | transcription-repair coupling factor Mfd | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS04775 | | transcription-repair coupling factor | 0.48 | A4249_RS10860 | | metalloprotease TldD | low | > 48 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS12390 | | transcription-repair coupling factor | 0.55 | AMB_RS21030 | | metalloprotease TldD | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0960 | | transcription-repair coupling factor (mfd) | 0.54 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 68 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_00876 | | Transcription-repair-coupling factor | 0.53 | MPMX19_00882 | | Metalloprotease TldD | low | > 112 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A1726 | | Transcription-repair coupling factor (NCBI) | 0.56 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | low | > 58 |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_013805 | | transcription-repair coupling factor | 0.50 | TX73_004255 | | metalloprotease TldD | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_1561 | | transcription-repair coupling factor (RefSeq) | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c14920 | | transcription-repair-coupling factor Mfd | 0.47 | PGA1_c06240 | | protein TldD | low | > 62 |
| Agrobacterium fabrum C58 | 0.29 | Atu1778 | | transcription-repair coupling factor | 0.51 | Atu0765 | | TldD | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.29 | SMc04450 | | transcription-repair coupling factor | 0.51 | SMc00960 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS09310 | | transcription-repair coupling factor | 0.52 | ABIE40_RS04050 | | metalloprotease TldD | low | > 107 |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_1326 | mfd | transcription-repair coupling factor | 0.23 | Synpcc7942_1127 | tldD | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 38 |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS02110 | | transcription-repair coupling factor | 0.36 | HMPREF1078_RS03620 | | TldD/PmbA family protein | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.24 | CA264_15820 | | transcription-repair coupling factor | 0.09 | CA264_16655 | | TldD protein | 0.37 | 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.24 | BT0252 | | transcription-repair coupling factor (NCBI ptt file) | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
Not shown: 11 genomes with orthologs for Dsui_2385 only; 6 genomes with orthologs for Dsui_3401 only