| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1622 | | excinuclease ABC, A subunit | 1.0 | Dsui_1810 | | DNA-binding protein, YbaB/EbfC family | 0.90 | 6 |
| Ralstonia sp. UNC404CL21Col | 0.79 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | 0.70 | ABZR87_RS10800 | | YbaB/EbfC family nucleoid-associated protein | low | > 80 |
| Ralstonia solanacearum UW163 | 0.78 | UW163_RS02345 | | excinuclease ABC subunit UvrA | 0.70 | UW163_RS12630 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.78 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | 0.70 | RALBFv3_RS15160 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Ralstonia solanacearum GMI1000 | 0.78 | RS_RS02080 | | excinuclease ABC subunit UvrA | 0.70 | RS_RS05975 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Ralstonia solanacearum PSI07 | 0.78 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | 0.69 | RPSI07_RS18215 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.77 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | 0.76 | QEN71_RS22290 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Burkholderia phytofirmans PsJN | 0.77 | BPHYT_RS02970 | | excinuclease ABC subunit A | 0.75 | BPHYT_RS09060 | | hypothetical protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.77 | HSERO_RS19810 | | excinuclease ABC subunit A | 0.75 | HSERO_RS18365 | | hypothetical protein | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.77 | H281DRAFT_01913 | | Excinuclease ABC subunit A | 0.75 | H281DRAFT_00833 | | hypothetical protein | — | — |
| Paraburkholderia graminis OAS925 | 0.77 | ABIE53_000732 | | excinuclease ABC subunit A | 0.76 | ABIE53_002047 | | DNA-binding YbaB/EbfC family protein | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.77 | RR42_RS02145 | | excinuclease ABC subunit A | 0.73 | RR42_RS13280 | | hypothetical protein | — | — |
| Pseudomonas putida KT2440 | 0.75 | PP_0483 | | excinuclease (uvrABC system protein A) | 0.70 | PP_4268 | | nucleoid-associated broad specificity regulator | — | — |
| Pseudomonas stutzeri RCH2 | 0.75 | Psest_3576 | | excinuclease ABC, A subunit | 0.69 | Psest_2546 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.75 | AO353_06855 | | ABC-ATPase UvrA | 0.66 | AO353_00680 | | nucleoid-associated protein | — | — |
| Pseudomonas sp. S08-1 | 0.75 | OH686_15495 | | excinuclease ABC subunit A | 0.71 | OH686_02390 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pseudomonas simiae WCS417 | 0.75 | PS417_25395 | | excinuclease ABC subunit A | 0.65 | PS417_20810 | | hypothetical protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.75 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.64 | PfGW456L13_4076 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.75 | Psyr_4520 | | Excinuclease ABC subunit A | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.75 | Psyr_4520 | | Excinuclease ABC subunit A | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas fluorescens SBW25 | 0.75 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.75 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pseudomonas sp. RS175 | 0.75 | PFR28_03974 | | UvrABC system protein A | 0.67 | PFR28_01075 | | Nucleoid-associated protein YbaB | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.74 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.66 | Pf1N1B4_3863 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_14785 | | ABC-ATPase UvrA | 0.66 | AO356_02505 | | nucleoid-associated protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.74 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.66 | Pf6N2E2_2327 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS03550 | | excinuclease ABC subunit UvrA | 0.51 | HER17_RS15700 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | 0.61 | HP15_1884 | | protein belonging to uncharacterized protein family UPF0133 | — | — |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | 0.64 | DZA65_RS06160 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pantoea sp. MT58 | 0.72 | IAI47_17815 | | excinuclease ABC subunit UvrA | 0.62 | IAI47_14470 | | YbaB/EbfC family nucleoid-associated protein | low | > 76 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | 0.64 | HGI48_RS05835 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | 0.60 | EX28DRAFT_2486 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Rahnella sp. WP5 | 0.72 | EX31_RS11990 | | excinuclease ABC subunit UvrA | 0.64 | EX31_RS22520 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF1429 | | Excinuclease ABC subunit A | 0.64 | GFF4389 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | 0.64 | ECOLIN_RS02800 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Serratia liquefaciens MT49 | 0.72 | IAI46_22905 | | excinuclease ABC subunit UvrA | 0.50 | IAI46_05235 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dickeya dadantii 3937 | 0.72 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | 0.64 | DDA3937_RS05785 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | 0.64 | JDDGAC_11810 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | 0.64 | NIAGMN_06215 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | 0.64 | KEDOAH_19805 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia fergusonii Becca | 0.72 | EFB2_04533 | | UvrABC system protein A | 0.64 | EFB2_03587 | | Nucleoid-associated protein YbaB | low | > 86 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_00276 | | UvrABC system protein A | 0.59 | MPMX20_01073 | | Nucleoid-associated protein YbaB | low | > 85 |
| Escherichia coli ECRC101 | 0.72 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | 0.64 | MCAODC_27385 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | 0.64 | NOLOHH_01090 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_03983 | | UvrABC system protein A | 0.64 | OHPLBJKB_03203 | | Nucleoid-associated protein YbaB | — | — |
| Escherichia coli ECRC62 | 0.72 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | 0.64 | BNILDI_22510 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli BW25113 | 0.72 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.64 | b0471 | ybaB | hypothetical protein (NCBI) | 0.26 | 32 |
| Escherichia coli ECRC101 | 0.72 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | 0.64 | OKFHMN_08160 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | 0.64 | HEPCGN_06775 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Kangiella aquimarina DSM 16071 | 0.72 | B158DRAFT_0885 | | excinuclease ABC, A subunit | 0.49 | B158DRAFT_2479 | | DNA-binding protein, YbaB/EbfC family | 0.63 | 10 |
| Escherichia coli BL21 | 0.72 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.64 | ECD_00422 | | DNA-binding protein, putative nucleoid-associated protein | — | — |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS01950 | | excinuclease ABC subunit A | 0.52 | BWI76_RS06825 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.71 | CSW01_02080 | | UvrABC system protein A | 0.65 | CSW01_05370 | | YbaB/EbfC family nucleoid-associated protein | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | 0.59 | LU632_RS18110 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.71 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | 0.60 | Xcc-8004.4013.1 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 74 |
| Shewanella oneidensis MR-1 | 0.71 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.59 | SO2014 | | conserved hypothetical protein TIGR00103 (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | 0.60 | Shewana3_2445 | | hypothetical protein (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_00179 | | Excinuclease ABC subunit A | 0.69 | MIT1002_02653 | | Nucleoid-associated protein YbaB | low | > 70 |
| Shewanella amazonensis SB2B | 0.70 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.62 | Sama_1311 | | hypothetical protein (RefSeq) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | 0.59 | ABZR86_RS06240 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Variovorax sp. SCN45 | 0.70 | GFF4944 | | Excinuclease ABC subunit A | 0.69 | GFF1109 | | Nucleoid-associated protein YaaK | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.64 | Shew_2234 | | hypothetical protein (RefSeq) | — | — |
| Variovorax sp. OAS795 | 0.70 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | 0.69 | ABID97_RS14695 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF2755 | | Excinuclease ABC subunit A | 0.65 | GFF4252 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 90 |
| Rhodanobacter denitrificans MT42 | 0.69 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | 0.61 | LRK55_RS01025 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | 0.60 | LRK54_RS01255 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | 0.59 | OKGIIK_05650 | ybaB | YbaB/EbfC family nucleoid-associated protein | 0.67 | 7 |
| Acidovorax sp. GW101-3H11 | 0.69 | Ac3H11_4387 | | Excinuclease ABC subunit A | 0.64 | Ac3H11_472 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | 0.67 | ABCV34_RS15475 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_02892 | | UvrABC system protein A | 0.48 | MPMX26_01644 | | Nucleoid-associated protein YbaB | low | > 36 |
| Azospirillum sp. SherDot2 | 0.62 | MPMX19_01152 | | UvrABC system protein A | 0.35 | MPMX19_02194 | | Nucleoid-associated protein YbaB | — | — |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | 0.45 | Rru_A3472 | | hypothetical protein (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | 0.41 | Dshi_0649 | | hypothetical protein (RefSeq) | 0.82 | 6 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.34 | AZOBR_RS03875 | | hypothetical protein | — | — |
| Agrobacterium fabrum C58 | 0.61 | Atu1513 | | ABC excinuclease subunit A | 0.45 | Atu0095 | | hypothetical protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.60 | SMc01235 | | excinuclease ABC subunit A | 0.39 | SMc02906 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.60 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | 0.41 | ABIE40_RS00285 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS12410 | | excinuclease ABC subunit UvrA | 0.44 | AMB_RS20750 | | YbaB/EbfC family nucleoid-associated protein | low | > 64 |
| Bosea sp. OAE506 | 0.60 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | 0.49 | ABIE41_RS04030 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.59 | Ga0059261_0674 | | excinuclease ABC, A subunit | 0.37 | Ga0059261_0668 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_014580 | | excinuclease ABC subunit UvrA | 0.39 | TX73_003190 | | YbaB/EbfC family nucleoid-associated protein | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c17370 | | uvrABC system protein A | 0.38 | PGA1_c30280 | | DNA-binding protein, YbaB/EbfC family | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.53 | HUW76_06660 | | excinuclease ABC subunit UvrA | 0.26 | HUW76_03900 | | YbaB/EbfC family nucleoid-associated protein | low | > 35 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.53 | CA264_18100 | | ABC-ATPase UvrA | 0.30 | CA264_04550 | | nucleoid-associated protein, YbaB/EbfC family | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.52 | Echvi_1138 | | excinuclease ABC, A subunit | 0.30 | Echvi_4060 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.48 | DVU1987 | uvrA | excinuclease ABC, A subunit (TIGR) | 0.33 | DVU3199 | | conserved hypothetical protein TIGR00103 (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.47 | DvMF_3050 | | excinuclease ABC, A subunit (RefSeq) | 0.35 | DvMF_2270 | | hypothetical protein (RefSeq) | — | — |
Not shown: 16 genomes with orthologs for Dsui_1622 only; 1 genomes with orthologs for Dsui_1810 only