| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1234 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_1227 | | DNA/RNA helicase, superfamily I | 0.81 | 9 |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS15845 | | metalloprotease PmbA | 0.61 | UW163_RS09895 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.61 | RALBFv3_RS03775 | | DNA-dependent helicase | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003116 | | PmbA protein | 0.63 | ABIE53_002936 | | DNA helicase-2/ATP-dependent DNA helicase PcrA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS04270 | | metalloprotease PmbA | 0.62 | QEN71_RS05110 | | 3'-5' exonuclease | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.63 | H281DRAFT_04469 | | ATP-dependent DNA helicase UvrD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS09660 | | metalloprotease PmbA | 0.62 | ABZR87_RS15705 | | UvrD-helicase domain-containing protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS19505 | | metalloprotease PmbA | 0.62 | RPSI07_RS13455 | | DNA-dependent helicase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS09265 | | peptidase C69 | 0.62 | HSERO_RS02160 | | DNA-dependent helicase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS14705 | | peptidase C69 | 0.63 | BPHYT_RS13840 | | DNA-dependent helicase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS14750 | | peptidase PMbA | 0.62 | RR42_RS15090 | | DNA helicase | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS04700 | | metalloprotease PmbA | 0.61 | RS_RS11220 | | DNA-dependent helicase | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.61 | Ac3H11_1660 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 79 |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS20695 | | metalloprotease PmbA | 0.61 | ABID97_RS09150 | | UvrD-helicase domain-containing protein | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10610 | | metalloprotease PmbA | 0.59 | ABCV34_RS05210 | | UvrD-helicase domain-containing protein | low | > 48 |
| Variovorax sp. SCN45 | 0.50 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.60 | GFF4000 | | ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.61 | GFF5598 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.44 | Pf6N2E2_4273 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.44 | AO356_11990 | | DNA helicase II | low | > 104 |
| Pseudomonas putida KT2440 | 0.48 | PP_0942 | | regulatory protease | 0.44 | PP_5352 | | DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex | low | > 96 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.44 | PFR28_04523 | | DNA helicase II | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.44 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.44 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.44 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.44 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.43 | Pf1N1B4_2005 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.44 | PfGW456L13_724 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.44 | AO353_10055 | | DNA helicase II | low | > 101 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.44 | ABZR86_RS16965 | | DNA helicase II | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.44 | Psest_4098 | | Superfamily I DNA and RNA helicases | low | > 67 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.42 | OH686_13045 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.43 | OKGIIK_16775 | | DNA helicase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.44 | LRK54_RS06850 | | DNA helicase II | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.44 | LRK55_RS06595 | | DNA helicase II | — | — |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.45 | Sama_0419 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12845 | | metalloprotease PmbA | 0.45 | CSW01_01015 | | DNA helicase II | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_22575 | | metalloprotease PmbA | 0.44 | IAI46_00735 | | DNA helicase II | low | > 86 |
| Escherichia coli BL21 | 0.43 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.45 | ECD_03689 | | DNA-dependent ATPase I and helicase II | — | — |
| Rahnella sp. WP5 | 0.43 | EX31_RS12320 | | metalloprotease PmbA | 0.44 | EX31_RS15175 | | DNA helicase II | low | > 89 |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.45 | OKFHMN_14410 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.45 | JDDGAC_18035 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.45 | KEDOAH_13740 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.45 | HEPCGN_13115 | uvrD | DNA helicase II | low | > 85 |
| Escherichia coli ECRC62 | 0.43 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.45 | BNILDI_04995 | uvrD | DNA helicase II | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.45 | OHPLBJKB_04237 | | DNA helicase II | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | GFF241 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 78 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.45 | NIAGMN_12165 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.45 | MCAODC_04915 | uvrD | DNA helicase II | — | — |
| Escherichia coli BW25113 | 0.43 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.45 | b3813 | uvrD | DNA-dependent ATPase I and helicase II (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.45 | NOLOHH_06540 | uvrD | DNA helicase II | low | > 57 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS20090 | | metalloprotease PmbA | 0.45 | HER17_RS01360 | | DNA helicase II | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | Xcc-8004.5114.1 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 74 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04298 | | Metalloprotease PmbA | 0.45 | EFB2_04824 | | DNA helicase II | low | > 86 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS02850 | | metalloprotease PmbA | 0.45 | BWI76_RS01220 | | DNA-dependent helicase II | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00230 | | peptidase PmbA | 0.46 | MIT1002_00153 | | DNA helicase II | low | > 70 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.45 | ECOLIN_RS21885 | | DNA helicase II | low | > 52 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_00517 | | Metalloprotease PmbA | 0.45 | MPMX20_04463 | | DNA helicase II | low | > 85 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.45 | EX28DRAFT_4482 | | ATP-dependent DNA helicase UvrD (EC 3.6.1.-) | low | > 76 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.46 | ABIE51_RS01985 | | DNA helicase II | low | > 62 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS01500 | | metalloprotease PmbA | 0.45 | DDA3937_RS19880 | | DNA helicase II | low | > 74 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.45 | Shewana3_0469 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.41 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.45 | SO0467 | uvrD | DNA helicase II (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS01415 | | metalloprotease PmbA | 0.45 | HGI48_RS20035 | | DNA helicase II | low | > 71 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS01480 | | metalloprotease PmbA | 0.45 | DZA65_RS21080 | | DNA helicase II | low | > 75 |
| Shewanella loihica PV-4 | 0.40 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.44 | Shew_3385 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 60 |
| Pantoea sp. MT58 | 0.40 | IAI47_02765 | | metalloprotease PmbA | 0.44 | IAI47_18390 | | DNA helicase II | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.45 | LU632_RS24125 | uvrD | DNA helicase II | — | — |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.47 | B158DRAFT_0238 | | Superfamily I DNA and RNA helicases | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.32 | AZOBR_RS12445 | | DNA helicase II | low | > 97 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.31 | MPMX19_01610 | | ATP-dependent DNA helicase PcrA | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22120 | | TldD/PmbA family protein | 0.30 | AMB_RS03725 | | DNA helicase II | low | > 64 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.31 | Rru_A1536 | | UvrD/REP helicase (NCBI) | low | > 58 |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c33480 | | protein PmbA | 0.31 | PGA1_c09450 | | DNA helicase II UvrD | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.30 | Ga0059261_0249 | | Superfamily I DNA and RNA helicases | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS09195 | | TldD/PmbA family protein | 0.30 | A4249_RS04960 | | UvrD-helicase domain-containing protein | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00897 | | PMBA protein | 0.30 | SMc01461 | | DNA helicase II protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.31 | ABIE40_RS11670 | | UvrD-helicase domain-containing protein | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.30 | Dshi_2483 | | UvrD/REP helicase (RefSeq) | — | — |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.30 | Atu2057 | | DNA helicase II | low | > 89 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.29 | BT0657 | | ATP-dependent DNA helicase (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.27 | HMPREF1181_RS16505 | | UvrD-helicase domain-containing protein | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.29 | HMPREF1078_RS03560 | | 3'-5' exonuclease | low | > 61 |
| Synechococcus elongatus PCC 7942 | 0.08 | Synpcc7942_1589 | pmbA | putative modulator of DNA gyrase | 0.30 | Synpcc7942_2168 | pcrA | ATP-dependent DNA helicase, Rep family | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.07 | CA264_16645 | | peptidase C69 | 0.31 | CA264_07795 | | ATP-dependent DNA helicase | — | — |
Not shown: 4 genomes with orthologs for Dsui_1234 only; 12 genomes with orthologs for Dsui_1227 only