| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_3401 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_0046 | | Zn-dependent oligopeptidase | 0.65 | 14 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.52 | GFF4214 | | Oligopeptidase A (EC 3.4.24.70) | low | > 90 |
| Variovorax sp. SCN45 | 0.70 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.53 | GFF963 | | Oligopeptidase A (EC 3.4.24.70) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.70 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | 0.52 | Ac3H11_4097 | | Oligopeptidase A (EC 3.4.24.70) | 0.42 | 8 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS03540 | | peptidase C69 | 0.60 | BPHYT_RS12875 | | oligopeptidase A | low | > 109 |
| Variovorax sp. OAS795 | 0.69 | ABID97_RS06335 | | metalloprotease TldD | 0.53 | ABID97_RS14080 | | M3 family metallopeptidase | 0.89 | 2 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_000851 | | TldD protein | 0.60 | ABIE53_002798 | | oligopeptidase A | 0.55 | 3 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05875 | | protease TldD | 0.60 | RR42_RS07340 | | oligopeptidase A | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.58 | H281DRAFT_00461 | | oligopeptidase A Metallo peptidase. MEROPS family M03A | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS13315 | | metalloprotease TldD | 0.61 | RS_RS08035 | | oligopeptidase A | low | > 80 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS08170 | | metalloprotease TldD | 0.61 | UW163_RS15000 | | oligopeptidase A | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS05455 | | metalloprotease TldD | 0.61 | RALBFv3_RS01690 | | oligopeptidase A | 0.68 | 49 |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS26555 | | metalloprotease TldD | 0.61 | QEN71_RS05695 | | M3 family metallopeptidase | 0.87 | 29 |
| Herbaspirillum seropedicae SmR1 | 0.68 | HSERO_RS07155 | | peptidase C69 | 0.63 | HSERO_RS07290 | | oligopeptidase A | 0.39 | 2 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS11850 | | metalloprotease TldD | 0.60 | RPSI07_RS15795 | | oligopeptidase A | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.67 | ABZR87_RS01105 | | metalloprotease TldD | 0.61 | ABZR87_RS13490 | | M3 family metallopeptidase | 0.44 | 21 |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS02590 | | metalloprotease TldD | 0.49 | ABCV34_RS04180 | | M3 family metallopeptidase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | 0.45 | ABZR86_RS14940 | | M3 family metallopeptidase | 0.55 | 3 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | 0.59 | Xcc-8004.4539.1 | | Oligopeptidase A (EC 3.4.24.70) | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.62 | OKGIIK_10280 | tldD | metalloprotease TldD | 0.44 | OKGIIK_15380 | dcp | oligopeptidase A | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS03145 | | metalloprotease TldD | 0.43 | LRK55_RS08380 | | M3 family metallopeptidase | 0.79 | 6 |
| Alteromonas macleodii MIT1002 | 0.62 | MIT1002_00227 | | protease TldD | 0.48 | MIT1002_03633 | | Oligopeptidase A | low | > 70 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS03395 | | metalloprotease TldD | 0.43 | LRK54_RS08615 | | M3 family metallopeptidase | 0.88 | 5 |
| Pseudomonas putida KT2440 | 0.61 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | 0.48 | PP_0096 | | oligopeptidase A | low | > 96 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | 0.50 | Shewana3_4051 | | oligopeptidase A (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS06795 | | metalloprotease TldD | 0.19 | ABIE51_RS09155 | | M3 family metallopeptidase | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.49 | Shew_3657 | | oligopeptidase A (RefSeq) | 0.68 | 1 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.48 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.48 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | low | > 86 |
| Pantoea sp. MT58 | 0.59 | IAI47_02465 | | metalloprotease TldD | 0.48 | IAI47_01345 | | oligopeptidase A | 0.46 | 27 |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.48 | PfGW456L13_624 | | Oligopeptidase A (EC 3.4.24.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_05215 | | protease TldD | 0.47 | AO353_10775 | | oligopeptidase A | low | > 101 |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS20140 | | metalloprotease TldD | 0.46 | HER17_RS21300 | | oligopeptidase A | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.59 | AO356_07095 | | protease TldD | 0.48 | AO356_11120 | | oligopeptidase A | low | > 104 |
| Shewanella oneidensis MR-1 | 0.59 | SO4091 | tldD | tldD protein (NCBI ptt file) | 0.50 | SO4699 | prlC | oligopeptidase A (NCBI ptt file) | 0.51 | 2 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_22685 | | metalloprotease TldD | 0.48 | IAI46_24210 | | oligopeptidase A | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.48 | Pf6N2E2_4091 | | Oligopeptidase A (EC 3.4.24.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.48 | Pf1N1B4_1844 | | Oligopeptidase A (EC 3.4.24.70) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.48 | OH686_12360 | | Oligopeptidase A | 0.67 | 32 |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.48 | PFLU_RS00240 | | oligopeptidase A | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.48 | PFLU_RS00240 | | oligopeptidase A | 0.44 | 84 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0474 | | TldD protein (RefSeq) | 0.49 | Sama_3546 | | oligopeptidase A (RefSeq) | low | > 62 |
| Pseudomonas simiae WCS417 | 0.58 | PS417_04285 | | protease TldD | 0.47 | PS417_00245 | | oligopeptidase A | 0.50 | 7 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS01460 | | metalloprotease TldD | 0.48 | DDA3937_RS21265 | | oligopeptidase A | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.48 | Psest_4320 | | Zn-dependent oligopeptidases | low | > 67 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS01380 | | metalloprotease TldD | 0.48 | HGI48_RS00045 | | oligopeptidase A | low | > 71 |
| Klebsiella michiganensis M5al | 0.57 | BWI76_RS25470 | | metalloprotease TldD | 0.48 | BWI76_RS26610 | | oligopeptidase A | low | > 92 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00161 | | Metalloprotease TldD | 0.47 | PFR28_04699 | | Oligopeptidase A | low | > 88 |
| Dickeya dianthicola ME23 | 0.57 | DZA65_RS01440 | | metalloprotease TldD | 0.48 | DZA65_RS00035 | | oligopeptidase A | low | > 75 |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04151 | | Metalloprotease TldD | 0.49 | MPMX20_04397 | | Oligopeptidase A | low | > 85 |
| Escherichia coli ECRC102 | 0.57 | NIAGMN_15515 | tldD | metalloprotease TldD | 0.49 | NIAGMN_14180 | prlC | oligopeptidase A | — | — |
| Escherichia coli BW25113 | 0.57 | b3244 | tldD | predicted peptidase (NCBI) | 0.49 | b3498 | prlC | oligopeptidase A (NCBI) | 0.52 | 2 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_00460 | | Metalloprotease TldD | 0.49 | OHPLBJKB_00205 | | Oligopeptidase A | low | > 73 |
| Escherichia coli ECOR27 | 0.57 | NOLOHH_09555 | tldD | metalloprotease TldD | 0.48 | NOLOHH_08350 | prlC | oligopeptidase A | low | > 57 |
| Escherichia coli ECRC62 | 0.57 | BNILDI_01980 | tldD | metalloprotease TldD | 0.48 | BNILDI_03210 | prlC | oligopeptidase A | — | — |
| Escherichia coli ECRC99 | 0.57 | KEDOAH_10395 | tldD | metalloprotease TldD | 0.49 | KEDOAH_11730 | prlC | oligopeptidase A | — | — |
| Escherichia coli ECRC101 | 0.57 | MCAODC_08275 | tldD | metalloprotease TldD | 0.49 | MCAODC_06930 | prlC | oligopeptidase A | — | — |
| Escherichia coli ECOR38 | 0.57 | HEPCGN_16620 | tldD | metalloprotease TldD | 0.49 | HEPCGN_15325 | prlC | oligopeptidase A | 0.63 | 48 |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS18595 | | metalloprotease TldD | 0.49 | ECOLIN_RS19985 | | oligopeptidase A | low | > 52 |
| Escherichia coli ECRC101 | 0.57 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.49 | OKFHMN_16415 | prlC | oligopeptidase A | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.57 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | 0.49 | GFF517 | | Oligopeptidase A (EC 3.4.24.70) | low | > 78 |
| Escherichia coli BL21 | 0.57 | ECD_03104 | | putative peptidase | 0.48 | ECD_03347 | | oligopeptidase A | 0.61 | 9 |
| Escherichia fergusonii Becca | 0.57 | EFB2_00586 | | Metalloprotease TldD | 0.48 | EFB2_00317 | | Oligopeptidase A | low | > 86 |
| Escherichia coli ECRC98 | 0.57 | JDDGAC_21380 | tldD | metalloprotease TldD | 0.49 | JDDGAC_20045 | prlC | oligopeptidase A | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_02220 | | metalloprotease TldD | 0.48 | CSW01_01010 | | oligopeptidase A | low | > 62 |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.48 | EX28DRAFT_4063 | | Zn-dependent oligopeptidases | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS21420 | tldD | metalloprotease TldD | 0.47 | LU632_RS19470 | prlC | oligopeptidase A | low | > 74 |
| Rahnella sp. WP5 | 0.56 | EX31_RS12265 | | metalloprotease TldD | 0.48 | EX31_RS05165 | | oligopeptidase A | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.47 | B158DRAFT_0457 | | Zn-dependent oligopeptidases | low | > 40 |
| Sphingomonas koreensis DSMZ 15582 | 0.54 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.23 | Ga0059261_2479 | | Zn-dependent oligopeptidases | low | > 68 |
| Azospirillum brasilense Sp245 | 0.54 | AZOBR_RS10600 | | peptidase C69 | 0.24 | AZOBR_RS23485 | | peptidase M3 | low | > 97 |
| Rhizobium sp. OAE497 | 0.52 | ABIE40_RS04050 | | metalloprotease TldD | 0.25 | ABIE40_RS18135 | | M3 family metallopeptidase | 0.84 | 64 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | 0.22 | CCNA_03816 | | peptidyl-dipeptidase DCP | 0.77 | 18 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | 0.22 | CCNA_03816 | | peptidyl-dipeptidase DCP | low | > 67 |
| Agrobacterium fabrum C58 | 0.51 | Atu0765 | | TldD | 0.26 | Atu2664 | | peptidyl-dipeptidase | 0.17 | 48 |
| Sinorhizobium meliloti 1021 | 0.51 | SMc00960 | | hypothetical protein | 0.26 | SMc04403 | | peptidyl-dipeptidase A protein | 0.29 | 14 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_004255 | | metalloprotease TldD | 0.24 | TX73_004495 | | M3 family metallopeptidase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.22 | Dshi_2973 | | Peptidyl-dipeptidase Dcp (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.48 | A4249_RS10860 | | metalloprotease TldD | 0.20 | A4249_RS12525 | | M3 family metallopeptidase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c06240 | | protein TldD | 0.24 | PGA1_c26590 | | peptidyl-dipeptidase Dcp | 0.76 | 1 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.27 | BT2834 | | peptidyl-dipeptidase (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.36 | HMPREF1078_RS03620 | | TldD/PmbA family protein | 0.23 | HMPREF1078_RS08580 | | M3 family metallopeptidase | low | > 61 |
| Bacteroides stercoris CC31F | 0.34 | HMPREF1181_RS03165 | | TldD/PmbA family protein | 0.27 | HMPREF1181_RS01125 | | M3 family metallopeptidase | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.09 | CA264_16655 | | TldD protein | 0.22 | CA264_01885 | | peptidase M3 | low | > 74 |
Not shown: 7 genomes with orthologs for Dsui_3401 only; 8 genomes with orthologs for Dsui_0046 only