Conservation of cofitness between CSW01_00650 and CSW01_13680 in Vibrio cholerae E7946 ATCC 55056

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00650 tyrosine recombinase XerC 1.0 CSW01_13680 DNA helicase RecG 0.73 10
Dickeya dadantii 3937 0.56 DDA3937_RS19890 tyrosine recombinase XerC 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG — —
Dickeya dianthicola 67-19 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS21090 tyrosine recombinase XerC 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Rahnella sp. WP5 0.56 EX31_RS15165 tyrosine recombinase XerC 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG 0.58 15
Klebsiella michiganensis M5al 0.55 BWI76_RS01210 tyrosine recombinase XerC 0.68 BWI76_RS27440 DNA helicase RecG 0.24 84
Serratia liquefaciens MT49 0.55 IAI46_00725 tyrosine recombinase XerC 0.69 IAI46_24905 ATP-dependent DNA helicase RecG 0.46 16
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF239 Tyrosine recombinase XerC 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Escherichia coli BL21 0.55 ECD_03687 site-specific tyrosine recombinase 0.68 ECD_03509 ATP-dependent DNA helicase 0.53 5
Escherichia coli ECRC98 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC102 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC100 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Escherichia coli ECRC101 0.55 MCAODC_04925 xerC tyrosine recombinase XerC 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC99 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 74
Escherichia coli BW25113 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.66 2
Escherichia coli ECOR38 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.74 5
Escherichia coli ECOR27 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 76
Escherichia fergusonii Becca 0.54 EFB2_04826 Tyrosine recombinase XerC 0.68 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC62 0.54 BNILDI_04985 xerC tyrosine recombinase XerC 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4480 tyrosine recombinase XerC 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Erwinia amylovora T8 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Pectobacterium carotovorum WPP14 0.54 HER17_RS01350 tyrosine recombinase XerC 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG 0.47 50
Klebsiella pneumoniae MKP103 0.53 KDGMDA_09700 tyrosine recombinase XerC 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG low > 95
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG — —
Erwinia tracheiphila SCR3 0.53 LU632_RS24135 xerC tyrosine recombinase XerC 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG — —
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC 0.70 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG — —
Pantoea sp. MT58 0.53 IAI47_18400 tyrosine recombinase XerC 0.70 IAI47_00500 ATP-dependent DNA helicase RecG 0.46 3
Enterobacter sp. TBS_079 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG 0.36 32
Shewanella sp. ANA-3 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.47 9
Shewanella oneidensis MR-1 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.70 2
Shewanella amazonensis SB2B 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.49 2
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.78 4
Alteromonas macleodii MIT1002 0.45 MIT1002_00157 Tyrosine recombinase XerC 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.31 11
Marinobacter adhaerens HP15 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.55 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Pseudomonas segetis P6 0.40 MPMX49_04536 Tyrosine recombinase XerC 0.57 MPMX49_00040 ATP-dependent DNA helicase RecG — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Methylophilus sp. DMC18 0.40 GFF1535 Tyrosine recombinase XerC 0.45 GFF2125 ATP-dependent DNA helicase RecG low > 43
Pseudomonas aeruginosa PA14 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG low > 100
Pseudomonas stutzeri RCH2 0.40 Psest_3767 tyrosine recombinase XerC 0.57 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas sp. SVBP6 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 93
Pseudomonas sp. BP01 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG low > 84
Pseudomonas putida KT2440 0.39 PP_5230 Tyrosine recombinase XerC 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.46 3
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.45 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.31 62
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.26 71
Pseudomonas sp. S08-1 0.38 OH686_13785 tyrosine recombinase XerC 0.56 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas sp. DMC3 0.38 GFF370 Tyrosine recombinase XerC 0.55 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.65 1
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.19 56
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_12725 recombinase XerC 0.55 AO356_12380 ATP-dependent DNA helicase RecG 0.68 1
Lysobacter sp. OAE881 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.82 3
Rhodanobacter denitrificans MT42 0.38 LRK55_RS08300 tyrosine recombinase XerC 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Pseudomonas sp. RS175 0.38 PFR28_04378 Tyrosine recombinase XerC 0.55 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_09050 recombinase XerC 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.51 2
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS02315 tyrosine recombinase XerC 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS08535 tyrosine recombinase XerC 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Dechlorosoma suillum PS 0.37 Dsui_0651 tyrosine recombinase XerC 0.42 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.75 1
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 93
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS01655 tyrosine recombinase XerC 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21475 recombinase XerC 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.29 22
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23690 tyrosine recombinase XerC 0.45 RPSI07_RS11625 DNA helicase RecG low > 81
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS00355 tyrosine recombinase XerC 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.40 10
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02202 integrase/recombinase XerC 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG — —
Pseudomonas simiae WCS417 0.34 PS417_27595 recombinase XerC 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.29 48
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.65 2
Ralstonia solanacearum GMI1000 0.34 RS_RS00260 Tyrosine recombinase XerC 1 0.45 RS_RS13565 DNA helicase RecG — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.43 29
Variovorax sp. SCN45 0.33 GFF4490 Site-specific tyrosine recombinase XerC 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.45 RALBFv3_RS05675 DNA helicase RecG 0.34 34
Ralstonia solanacearum UW163 0.33 UW163_RS03905 tyrosine recombinase XerC 0.45 UW163_RS07950 DNA helicase RecG — —
Variovorax sp. OAS795 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.69 1
Paraburkholderia graminis OAS925 0.33 ABIE53_000426 integrase/recombinase XerC 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1995 Tyrosine recombinase XerC 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF547 Tyrosine recombinase XerC 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS00615 recombinase XerC 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG 0.40 12
Bacteroides thetaiotaomicron VPI-5482 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Rhizobium sp. OAE497 0.25 ABIE40_RS17950 tyrosine recombinase XerC 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Magnetospirillum magneticum AMB-1 0.25 AMB_RS21485 tyrosine recombinase XerC 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG — —
Agrobacterium fabrum C58 0.24 Atu2628 site-specific recombinase 0.33 Atu1780 ATP-dependent DNA helicase — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS03965 tyrosine recombinase XerC 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.29 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2764 Site-specific recombinase XerD 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.31 39
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.51 16
Fusobacterium nucleatum SB010 0.16 HUW76_06795 tyrosine-type recombinase/integrase 0.32 HUW76_01465 ATP-dependent DNA helicase RecG low > 35

Not shown: 1 genomes with orthologs for CSW01_00650 only; 20 genomes with orthologs for CSW01_13680 only