| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12845 | | metalloprotease PmbA | 1.0 | CSW01_10645 | | flagellar motor switch protein FliG | 0.85 | 20 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS20090 | | metalloprotease PmbA | 0.39 | HER17_RS08275 | | flagellar motor switch protein FliG | low | > 75 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_22575 | | metalloprotease PmbA | 0.38 | IAI46_15845 | | flagellar motor switch protein FliG | low | > 87 |
| Escherichia fergusonii Becca | 0.64 | EFB2_04298 | | Metalloprotease PmbA | 0.36 | EFB2_02007 | | Flagellar motor switch protein FliG | low | > 86 |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.36 | NOLOHH_16340 | fliG | flagellar motor switch protein FliG | 0.58 | 69 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.36 | HEPCGN_04070 | fliG | flagellar motor switch protein FliG | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.36 | OHPLBJKB_01790 | | Flagellar motor switch protein FliG | low | > 74 |
| Escherichia coli BW25113 | 0.64 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.36 | b1939 | fliG | flagellar motor switch protein G (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.64 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.36 | BNILDI_15130 | fliG | flagellar motor switch protein FliG | low | > 75 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.36 | KEDOAH_02385 | fliG | flagellar motor switch protein FliG | — | — |
| Escherichia coli ECRC101 | 0.64 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.36 | MCAODC_19685 | fliG | flagellar motor switch protein FliG | low | > 87 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.36 | JDDGAC_00295 | fliG | flagellar motor switch protein FliG | low | > 87 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.36 | NIAGMN_02345 | fliG | flagellar motor switch protein FliG | low | > 80 |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.36 | OKFHMN_25710 | fliG | flagellar motor switch protein FliG | low | > 79 |
| Rahnella sp. WP5 | 0.64 | EX31_RS12320 | | metalloprotease PmbA | 0.37 | EX31_RS09545 | | flagellar motor switch protein FliG | low | > 89 |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.36 | ECOLIN_RS11065 | | flagellar motor switch protein FliG | low | > 55 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | EX28DRAFT_0615 | | flagellar motor switch protein FliG | low | > 76 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00517 | | Metalloprotease PmbA | 0.37 | MPMX20_02936 | | Flagellar motor switch protein FliG | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.37 | GFF4017 | | Flagellar motor switch protein FliG | low | > 78 |
| Erwinia amylovora T8 | 0.63 | OLJFJH_02355 | | metalloprotease PmbA | 0.39 | OLJFJH_15360 | | flagellar motor switch protein FliG | low | > 58 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS01500 | | metalloprotease PmbA | 0.39 | DDA3937_RS13370 | | flagellar motor switch protein FliG | 0.77 | 37 |
| Pantoea agglomerans CFBP13505 P0401 | 0.62 | PagCFBP13505_RS11365 | | metalloprotease PmbA | 0.37 | PagCFBP13505_RS01935 | | flagellar motor switch protein FliG | low | > 74 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS01415 | | metalloprotease PmbA | 0.40 | HGI48_RS13415 | | flagellar motor switch protein FliG | low | > 71 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS01480 | | metalloprotease PmbA | 0.40 | DZA65_RS13900 | | flagellar motor switch protein FliG | low | > 75 |
| Pantoea sp. MT58 | 0.62 | IAI47_02765 | | metalloprotease PmbA | 0.37 | IAI47_08025 | | flagellar motor switch protein FliG | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.38 | LU632_RS10570 | fliG | flagellar motor switch protein FliG | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.59 | IJEDHG_06770 | pmbA | metalloprotease PmbA | 0.38 | IJEDHG_21230 | fliG | flagellar motor switch protein FliG | low | > 61 |
| Shewanella oneidensis MR-1 | 0.58 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.69 | SO3227 | fliG | flagellar motor switch protein FliG (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.70 | Shewana3_1343 | fliG | flagellar motor switch protein G (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0482 | | PmbA protein (RefSeq) | 0.69 | Sama_2296 | fliG | flagellar motor switch protein G (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.56 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.69 | Shew_1367 | fliG | flagellar motor switch protein G (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_00230 | | peptidase PmbA | 0.69 | MIT1002_01086 | | Flagellar motor switch protein FliG | 0.53 | 44 |
| Pseudomonas putida KT2440 | 0.49 | PP_0942 | | regulatory protease | 0.55 | PP_4368 | | flagellar motor switch protein | low | > 96 |
| Pseudomonas sp. BP01 | 0.48 | JOY50_RS11080 | pmbA | metalloprotease PmbA | 0.55 | JOY50_RS00680 | fliG | flagellar motor switch protein FliG | low | > 84 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_00163 | | Metalloprotease PmbA | 0.56 | PFR28_00833 | | Flagellar motor switch protein FliG | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.56 | AO356_03830 | | flagellar motor switch protein FliG | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.55 | PFLU_RS21770 | | flagellar motor switch protein FliG | 0.58 | 39 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.55 | PFLU_RS21770 | | flagellar motor switch protein FliG | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.48 | GEMAOFIL_01064 | | Metalloprotease PmbA | 0.55 | GEMAOFIL_04158 | | Flagellar motor switch protein FliG | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.48 | QF045_RS07285 | | metalloprotease PmbA | 0.55 | QF045_RS21930 | | flagellar motor switch protein FliG | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | Pf6N2E2_2592 | | Flagellar motor switch protein FliG | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_05205 | | peptidase PmbA | 0.56 | AO353_18685 | | flagellar motor switch protein FliG | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | Pf1N1B4_3605 | | Flagellar motor switch protein FliG | low | > 87 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.55 | PS417_19800 | | flagellar motor switch protein FliG | 0.43 | 57 |
| Pseudomonas sp. DMC3 | 0.47 | GFF1818 | | Metalloprotease PmbA | 0.56 | GFF2450 | | Flagellar motor switch protein FliG | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.55 | Psyr_3456 | | Flagellar motor switch protein FliG | 0.29 | 72 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.55 | Psyr_3456 | | Flagellar motor switch protein FliG | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS04235 | pmbA | metalloprotease PmbA | 0.55 | COO64_RS21275 | fliG | flagellar motor switch protein FliG | low | > 93 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | OH686_02830 | | flagellar motor switch protein FliG | low | > 80 |
| Pseudomonas aeruginosa MRSN321 | 0.47 | DY961_RS24115 | pmbA;go_function=metallopeptidase | metalloprotease PmbA | 0.57 | DY961_RS06940 | fliG;go_component=bacterial-type | flagellar motor switch protein FliG | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_01720 | | metalloprotease PmbA | 0.57 | IKLFDK_05070 | | flagellar motor switch protein G | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.47 | DQ20_RS56575 | pmbA;go_function=metallopeptidase | metalloprotease PmbA | 0.57 | DQ20_RS45895 | fliG;go_component=bacterial-type | flagellar motor switch protein FliG | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | PfGW456L13_4352 | | Flagellar motor switch protein FliG | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.56 | Psest_1720 | | flagellar motor switch protein FliG | low | > 67 |
| Methylophilus sp. DMC18 | 0.46 | GFF830 | | Metalloprotease PmbA | 0.45 | GFF541 | | Flagellar motor switch protein FliG | low | > 43 |
| Pseudomonas segetis P6 | 0.46 | MPMX49_03863 | | Metalloprotease PmbA | 0.56 | MPMX49_03144 | | Flagellar motor switch protein FliG | low | > 75 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.49 | OKGIIK_02750 | fliG | flagellar motor switch protein FliG | low | > 53 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | Xcc-8004.2810.1 | | Flagellar motor switch protein FliG | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS03125 | | metalloprotease PmbA | 0.48 | LRK55_RS13240 | | flagellar motor switch protein FliG | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.48 | ABZR86_RS20175 | | flagellar motor switch protein FliG | low | > 74 |
| Rhodanobacter sp000427505 FW510-R12 | 0.45 | LRK53_RS06580 | | metalloprotease PmbA | 0.48 | LRK53_RS15075 | | flagellar motor switch protein FliG | low | > 59 |
| Variovorax sp. SCN45 | 0.44 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.35 | GFF5749 | | Flagellar motor switch protein FliG | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.48 | LRK54_RS13500 | | flagellar motor switch protein FliG | low | > 59 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.44 | Dsui_1755 | | flagellar motor switch protein FliG | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS10610 | | metalloprotease PmbA | 0.40 | ABCV34_RS05650 | | flagellar motor switch protein FliG | low | > 48 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS06805 | | metalloprotease PmbA | 0.44 | ABIE51_RS16785 | | flagellar motor switch protein FliG | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.42 | RALBFv3_RS21585 | | flagellar motor switch protein FliG | low | > 76 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS15845 | | metalloprotease PmbA | 0.42 | UW163_RS17605 | | flagellar motor switch protein FliG | — | — |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | Ac3H11_1405 | | Flagellar motor switch protein FliG | low | > 79 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS09660 | | metalloprotease PmbA | 0.41 | ABZR87_RS22075 | | flagellar motor switch protein FliG | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS19505 | | metalloprotease PmbA | 0.41 | RPSI07_RS01540 | | flagellar motor switch protein FliG | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS04270 | | metalloprotease PmbA | 0.40 | QEN71_RS28800 | | flagellar motor switch protein FliG | 0.78 | 63 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003116 | | PmbA protein | 0.40 | ABIE53_000075 | | flagellar motor switch protein FliG | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.40 | H281DRAFT_05785 | | flagellar motor switch protein FliG | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS09265 | | peptidase C69 | 0.43 | HSERO_RS10305 | | flagellar motor switch protein FliG | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | GFF1451 | | Flagellar motor switch protein FliG | low | > 90 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS14705 | | peptidase C69 | 0.40 | BPHYT_RS18780 | | flagellar motor switch protein FliG | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS04700 | | metalloprotease PmbA | 0.41 | RS_RS19040 | | flagellar motor switch protein FliG | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS14750 | | peptidase PMbA | 0.40 | RR42_RS23565 | | flagellar motor switch protein G | low | > 128 |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS11930 | | modulator protein | 0.26 | AZOBR_RS03780 | | flagellar motor switch protein FliG | low | > 97 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.25 | MPMX19_04000 | | Flagellar motor switch protein FliG | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.29 | Ga0059261_2071 | | flagellar motor switch protein FliG | low | > 68 |
| Sphingobium sp. HT1-2 | 0.30 | GFF1059 | | TldE protein, part of TldE/TldD proteolytic complex | 0.32 | GFF3729 | | Flagellar motor switch protein FliG | low | > 95 |
| Rhodopseudomonas palustris CGA009 | 0.28 | TX73_005930 | | TldD/PmbA family protein | 0.21 | TX73_006495 | | flagellar motor switch protein FliG | 0.30 | 62 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.26 | CCNA_00951 | | flagellar motor switch protein FliG | 0.71 | 26 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.26 | CCNA_00951 | | flagellar motor switch protein FliG | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.27 | AMB_RS22120 | | TldD/PmbA family protein | 0.26 | AMB_RS02585 | | flagellar motor switch protein FliG | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.27 | SMc00897 | | PMBA protein | 0.12 | SMc03019 | | flagellar motor switch protein G | low | > 103 |
| Rhodospirillum rubrum S1H | 0.25 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.27 | Rru_A0544 | | Flagellar motor switch protein FliG (NCBI) | low | > 58 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.12 | ABIE40_RS02935 | | flagellar motor switch protein FliG | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.25 | A4249_RS09195 | | TldD/PmbA family protein | 0.26 | A4249_RS09780 | | flagellar motor switch protein FliG | low | > 48 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.10 | Dshi_1845 | | flagellar motor switch protein FliG (RefSeq) | low | > 64 |
Not shown: 13 genomes with orthologs for CSW01_12845 only; 5 genomes with orthologs for CSW01_10645 only