Conservation of cofitness between CSW01_00650 and CSW01_09240 in Vibrio cholerae E7946 ATCC 55056

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00650 tyrosine recombinase XerC 1.0 CSW01_09240 Holliday junction branch migration DNA helicase RuvB 0.77 7
Dickeya dadantii 3937 0.56 DDA3937_RS19890 tyrosine recombinase XerC 0.81 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dianthicola 67-19 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.81 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dianthicola ME23 0.56 DZA65_RS21090 tyrosine recombinase XerC 0.81 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB — —
Rahnella sp. WP5 0.56 EX31_RS15165 tyrosine recombinase XerC 0.82 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB — —
Klebsiella michiganensis M5al 0.55 BWI76_RS01210 tyrosine recombinase XerC 0.80 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB — —
Serratia liquefaciens MT49 0.55 IAI46_00725 tyrosine recombinase XerC 0.81 IAI46_14620 Holliday junction branch migration DNA helicase RuvB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF239 Tyrosine recombinase XerC 0.79 GFF1639 Holliday junction DNA helicase RuvB — —
Escherichia coli ECRC98 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC 0.79 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC99 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC 0.79 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC100 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC 0.79 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli BL21 0.55 ECD_03687 site-specific tyrosine recombinase 0.79 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome — —
Escherichia coli ECRC101 0.55 MCAODC_04925 xerC tyrosine recombinase XerC 0.79 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC102 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC 0.79 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECOR27 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC 0.79 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.79 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB — —
Escherichia fergusonii Becca 0.54 EFB2_04826 Tyrosine recombinase XerC 0.79 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli ECOR38 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.79 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB 0.62 15
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC 0.79 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli BW25113 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.79 b1860 ruvB Holliday junction DNA helicase B (NCBI) 0.49 24
Escherichia coli ECRC62 0.54 BNILDI_04985 xerC tyrosine recombinase XerC 0.79 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4480 tyrosine recombinase XerC 0.79 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB — —
Erwinia amylovora T8 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.81 OLJFJH_12860 Holliday junction branch migration DNA helicase RuvB — —
Pectobacterium carotovorum WPP14 0.54 HER17_RS01350 tyrosine recombinase XerC 0.81 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB 0.76 5
Klebsiella pneumoniae MKP103 0.53 KDGMDA_09700 tyrosine recombinase XerC 0.80 KDGMDA_25410 Holliday junction branch migration DNA helicase RuvB 0.34 4
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC 0.81 IJEDHG_22140 ruvB Holliday junction branch migration DNA helicase RuvB — —
Erwinia tracheiphila SCR3 0.53 LU632_RS24135 xerC tyrosine recombinase XerC 0.81 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB — —
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC 0.81 PagCFBP13505_RS02330 Holliday junction branch migration DNA helicase RuvB — —
Pantoea sp. MT58 0.53 IAI47_18400 tyrosine recombinase XerC 0.80 IAI47_08450 Holliday junction branch migration DNA helicase RuvB 0.44 6
Enterobacter sp. TBS_079 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.80 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB 0.38 23
Shewanella sp. ANA-3 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.77 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq) — —
Shewanella oneidensis MR-1 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.77 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.76 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) 0.33 14
Alteromonas macleodii MIT1002 0.45 MIT1002_00157 Tyrosine recombinase XerC 0.81 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.77 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB 0.77 5
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.75 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) low > 60
Marinobacter adhaerens HP15 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.75 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB — —
Pseudomonas segetis P6 0.40 MPMX49_04536 Tyrosine recombinase XerC 0.74 MPMX49_01685 Holliday junction ATP-dependent DNA helicase RuvB — —
Methylophilus sp. DMC18 0.40 GFF1535 Tyrosine recombinase XerC 0.74 GFF2327 Holliday junction ATP-dependent DNA helicase RuvB low > 43
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.68 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB — —
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC 0.75 DQ20_RS45195 ruvB;go_function=DNA Holliday junction branch migration DNA helicase RuvB low > 101
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC 0.75 DY961_RS07595 ruvB;go_function=DNA Holliday junction branch migration DNA helicase RuvB low > 100
Pseudomonas stutzeri RCH2 0.40 Psest_3767 tyrosine recombinase XerC 0.74 Psest_1497 Holliday junction DNA helicase, RuvB subunit — —
Pseudomonas aeruginosa PA14 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.75 IKLFDK_04375 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas sp. SVBP6 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.74 COO64_RS20100 ruvB Holliday junction branch migration DNA helicase RuvB low > 93
Pseudomonas sp. BP01 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.73 JOY50_RS01815 ruvB Holliday junction branch migration DNA helicase RuvB low > 84
Pseudomonas putida KT2440 0.39 PP_5230 Tyrosine recombinase XerC 0.73 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.54 1
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.75 Psyr_1410 Holliday junction DNA helicase RuvB 0.36 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.75 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.75 PfGW456L13_1853 Holliday junction DNA helicase RuvB 0.28 49
Pseudomonas sp. S08-1 0.38 OH686_13785 tyrosine recombinase XerC 0.75 OH686_19135 Holliday junction DNA helicase RuvB low > 80
Pseudomonas sp. DMC3 0.38 GFF370 Tyrosine recombinase XerC 0.75 GFF5184 Holliday junction ATP-dependent DNA helicase RuvB low > 89
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.74 Pf6N2E2_5537 Holliday junction DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC 0.75 Pf1N1B4_637 Holliday junction DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_12725 recombinase XerC 0.74 AO356_18025 ATP-dependent DNA helicase RuvB 0.65 2
Lysobacter sp. OAE881 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.68 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_09050 recombinase XerC 0.75 AO353_03580 ATP-dependent DNA helicase RuvB 0.32 28
Pseudomonas sp. RS175 0.38 PFR28_04378 Tyrosine recombinase XerC 0.75 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB 0.47 5
Rhodanobacter denitrificans MT42 0.38 LRK55_RS08300 tyrosine recombinase XerC 0.67 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB — —
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS02315 tyrosine recombinase XerC 0.67 LRK53_RS05130 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas orientalis W4I3 0.37 QF045_RS01960 tyrosine recombinase XerC 0.75 QF045_RS24610 Holliday junction branch migration DNA helicase RuvB low > 93
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC 0.66 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS08535 tyrosine recombinase XerC 0.67 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.67 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB 0.56 26
Dechlorosoma suillum PS 0.37 Dsui_0651 tyrosine recombinase XerC 0.74 Dsui_0484 Holliday junction DNA helicase, RuvB subunit — —
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC 0.75 GEMAOFIL_04641 Holliday junction ATP-dependent DNA helicase RuvB low > 96
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS01655 tyrosine recombinase XerC 0.72 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21475 recombinase XerC 0.71 HSERO_RS02095 Holliday junction DNA helicase RuvB low > 78
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23690 tyrosine recombinase XerC 0.71 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS00355 tyrosine recombinase XerC 0.73 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas simiae WCS417 0.34 PS417_27595 recombinase XerC 0.75 PS417_22445 ATP-dependent DNA helicase RuvB 0.43 1
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02202 integrase/recombinase XerC 0.72 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.49 52
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.32 33
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.71 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS00260 Tyrosine recombinase XerC 1 0.71 RS_RS02485 Holliday junction branch migration DNA helicase RuvB — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.71 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB — —
Variovorax sp. SCN45 0.33 GFF4490 Site-specific tyrosine recombinase XerC 0.70 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) low > 127
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.71 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB — —
Ralstonia solanacearum UW163 0.33 UW163_RS03905 tyrosine recombinase XerC 0.71 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB — —
Variovorax sp. OAS795 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.69 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000426 integrase/recombinase XerC 0.72 ABIE53_003495 Holliday junction DNA helicase RuvB — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1995 Tyrosine recombinase XerC 0.70 Ac3H11_4685 Holliday junction DNA helicase RuvB — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF547 Tyrosine recombinase XerC 0.70 GFF1665 Holliday junction DNA helicase RuvB — —
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS00615 recombinase XerC 0.73 RR42_RS02700 ATP-dependent DNA helicase RuvB — —
Bacteroides ovatus ATCC 8483 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.57 BACOVA_00895 Holliday junction DNA helicase RuvB — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) 0.57 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC 0.57 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.57 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB low > 67
Rhizobium sp. OAE497 0.25 ABIE40_RS17950 tyrosine recombinase XerC 0.59 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB low > 107
Magnetospirillum magneticum AMB-1 0.25 AMB_RS21485 tyrosine recombinase XerC 0.59 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB — —
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase 0.57 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB — —
Agrobacterium fabrum C58 0.24 Atu2628 site-specific recombinase 0.60 Atu3722 Holliday junction DNA helicase RuvB — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS03965 tyrosine recombinase XerC 0.59 AZOBR_RS09050 Holliday junction DNA helicase RuvB — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.60 TX73_005665 Holliday junction branch migration DNA helicase RuvB — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2764 Site-specific recombinase XerD 0.58 Ga0059261_0819 Holliday junction DNA helicase subunit RuvB — —
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.61 ABIE41_RS09480 Holliday junction branch migration DNA helicase RuvB — —
Fusobacterium nucleatum SB010 0.16 HUW76_06795 tyrosine-type recombinase/integrase 0.59 HUW76_04170 Holliday junction branch migration DNA helicase RuvB low > 35

Not shown: 0 genomes with orthologs for CSW01_00650 only; 24 genomes with orthologs for CSW01_09240 only