| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_05185 | | excinuclease ABC subunit UvrB | 1.0 | CSW01_04845 | | D-alanyl-D-alanine carboxypeptidase | 0.59 | 3 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_06550 | | excinuclease ABC subunit B | 0.56 | IAI46_05915 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 87 |
| Erwinia tracheiphila SCR3 | 0.77 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.56 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.77 | IJEDHG_19590 | uvrB | excinuclease ABC subunit UvrB | 0.56 | IJEDHG_02480 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 61 |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS13420 | | excinuclease ABC subunit B | 0.58 | HER17_RS15260 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Rahnella sp. WP5 | 0.77 | EX31_RS23720 | | excinuclease ABC subunit B | 0.57 | EX31_RS23105 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 89 |
| Pantoea agglomerans CFBP13505 P0401 | 0.76 | PagCFBP13505_RS03805 | | excinuclease ABC subunit B | 0.56 | PagCFBP13505_RS03265 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Pantoea sp. MT58 | 0.76 | IAI47_13505 | | excinuclease ABC subunit B | 0.57 | IAI47_14040 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 76 |
| Escherichia coli Nissle 1917 | 0.76 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.55 | ECOLIN_RS03445 | | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Escherichia coli ECRC100 | 0.76 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.55 | OKFHMN_07380 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 79 |
| Escherichia coli BL21 | 0.76 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.55 | ECD_00601 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) | low | > 61 |
| Escherichia coli ECRC102 | 0.76 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.55 | NIAGMN_05435 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 80 |
| Escherichia coli BW25113 | 0.76 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.55 | b0632 | dacA | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.76 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.55 | NOLOHH_23755 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 76 |
| Escherichia coli ECRC99 | 0.76 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.55 | KEDOAH_20590 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.76 | OHPLBJKB_02934 | | UvrABC system protein B | 0.55 | OHPLBJKB_03074 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Escherichia coli ECRC62 | 0.76 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.55 | BNILDI_21765 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Escherichia coli ECRC98 | 0.76 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.55 | JDDGAC_11025 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 87 |
| Escherichia coli ECRC101 | 0.76 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.55 | MCAODC_26595 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 87 |
| Escherichia fergusonii Becca | 0.76 | EFB2_03326 | | UvrABC system protein B | 0.54 | EFB2_03460 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Escherichia coli ECOR38 | 0.76 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.55 | HEPCGN_00895 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 88 |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.55 | BWI76_RS08020 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.55 | EX28DRAFT_2331 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.57 | DDA3937_RS06155 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_01408 | | UvrABC system protein B | 0.55 | MPMX20_01291 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 85 |
| Shewanella loihica PV-4 | 0.76 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.68 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | low | > 60 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.56 | DZA65_RS06545 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.57 | HGI48_RS06200 | | D-alanyl-D-alanine carboxypeptidase DacA | 0.69 | 32 |
| Klebsiella pneumoniae MKP103 | 0.75 | KDGMDA_17050 | | excinuclease ABC subunit UvrB | 0.55 | KDGMDA_16380 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 95 |
| Erwinia amylovora T8 | 0.75 | OLJFJH_16735 | | excinuclease ABC subunit UvrB | 0.55 | OLJFJH_17245 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF675 | | Excinuclease ABC subunit B | 0.55 | GFF4545 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.75 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.62 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Shewanella amazonensis SB2B | 0.74 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.69 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.74 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.69 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.74 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.69 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2C3 | 0.73 | AO356_21335 | | excinuclease ABC subunit B | 0.46 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | 0.30 | 40 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_02837 | | UvrABC system protein B | 0.47 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas aeruginosa PA14 | 0.72 | IKLFDK_15985 | | excinuclease ABC subunit UvrB | 0.45 | IKLFDK_20625 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.72 | DY961_RS01215 | uvrB;go_component=excinuclease | excinuclease ABC subunit UvrB | 0.45 | DY961_RS12860 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.72 | DQ20_RS34340 | uvrB;go_component=excinuclease | excinuclease ABC subunit UvrB | 0.45 | DQ20_RS48190 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.72 | Psyr_1974 | | Excinuclease ABC subunit B | 0.47 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.72 | Psyr_1974 | | Excinuclease ABC subunit B | 0.47 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas sp. DMC3 | 0.72 | GFF774 | | UvrABC system protein B | 0.46 | GFF3884 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.46 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.44 | 13 |
| Pseudomonas stutzeri RCH2 | 0.72 | Psest_1296 | | excinuclease ABC, B subunit | 0.46 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | low | > 67 |
| Pseudomonas orientalis W4I3 | 0.72 | QF045_RS20805 | | excinuclease ABC subunit UvrB | 0.46 | QF045_RS26990 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.72 | AO353_20545 | | excinuclease ABC subunit B | 0.46 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.72 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.46 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.46 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.27 | 40 |
| Pseudomonas simiae WCS417 | 0.72 | PS417_18685 | | excinuclease ABC subunit B | 0.46 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | 0.27 | 32 |
| Pseudomonas sp. SVBP6 | 0.72 | COO64_RS05730 | uvrB | excinuclease ABC subunit UvrB | 0.46 | COO64_RS15590 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.46 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas putida KT2440 | 0.72 | PP_1974 | | excinuclease UvrABC protein B | 0.45 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas sp. BP01 | 0.72 | JOY50_RS16715 | uvrB | excinuclease ABC subunit UvrB | 0.45 | JOY50_RS17720 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.72 | GEMAOFIL_03964 | | UvrABC system protein B | 0.46 | GEMAOFIL_05094 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.46 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas segetis P6 | 0.71 | MPMX49_03091 | | UvrABC system protein B | 0.46 | MPMX49_01056 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 75 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_04580 | | excinuclease ABC subunit B | 0.45 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Marinobacter adhaerens HP15 | 0.70 | HP15_1372 | | excinuclease ABC subunit B | 0.45 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.41 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.42 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 53 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.69 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.42 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.69 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.41 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.41 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | low | > 59 |
| Rhodanobacter sp000427505 FW510-R12 | 0.69 | LRK53_RS14375 | | excinuclease ABC subunit UvrB | 0.41 | LRK53_RS17780 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.50 | B158DRAFT_0079 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Acinetobacter baumannii LAC-4 | 0.67 | RR41_RS04945 | | excinuclease ABC subunit UvrB | 0.40 | RR41_RS05330 | | D-alanyl-D-alanine carboxypeptidase PBP5/6 | low | > 55 |
| Lysobacter sp. OAE881 | 0.67 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.40 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Dechlorosoma suillum PS | 0.66 | Dsui_2434 | | excinuclease ABC, B subunit | 0.37 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.66 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.36 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_02142 | | UvrABC system protein B | 0.39 | MPMX26_01051 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.66 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.36 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.66 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.34 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.66 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.34 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum GMI1000 | 0.65 | RS_RS05005 | | UvrABC system protein B | 0.35 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.36 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS05995 | | excinuclease ABC subunit B | 0.39 | RR42_RS01680 | | cytochrome C550 | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.65 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.36 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.65 | ABIE53_001645 | | excinuclease ABC subunit B | 0.36 | ABIE53_000626 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.37 | BPHYT_RS02415 | | cytochrome C550 | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.35 | HSERO_RS21530 | | cytochrome C550 | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.64 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.34 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 48 |
| Methylophilus sp. DMC18 | 0.63 | GFF1123 | | UvrABC system protein B | 0.39 | GFF2179 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 43 |
| Acidovorax sp. GW101-3H11 | 0.63 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.32 | Ac3H11_2142 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.63 | GFF4962 | | Excinuclease ABC subunit B | 0.33 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.60 | 70 |
| Variovorax sp. OAS795 | 0.62 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.32 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 91 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.33 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.35 | MPMX19_01465 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Magnetospirillum magneticum AMB-1 | 0.59 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.30 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | low | > 64 |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.38 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.28 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.25 | Dshi_0923 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_c26160 | | uvrABC system protein B | 0.26 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Sphingobium sp. HT1-2 | 0.56 | GFF700 | | Excinuclease ABC subunit B | 0.29 | GFF5300 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
Not shown: 24 genomes with orthologs for CSW01_05185 only; 5 genomes with orthologs for CSW01_04845 only