Conservation of cofitness between CSW01_00470 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

105 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00470 twin-arginine translocase subunit TatC 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.85 16
Dickeya dadantii 3937 0.75 DDA3937_RS20305 Sec-independent protein translocase subunit TatC 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola ME23 0.74 DZA65_RS00980 Sec-independent protein translocase subunit TatC 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS01330 twin-arginine translocase subunit TatC 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Rahnella sp. WP5 0.73 EX31_RS14600 Sec-independent protein translocase subunit TatC 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Serratia liquefaciens MT49 0.72 IAI46_01090 Sec-independent protein translocase subunit TatC 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Erwinia amylovora T8 0.72 OLJFJH_06525 Sec-independent protein translocase subunit TatC 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF265 Twin-arginine translocation protein TatC 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.79 17
Pectobacterium carotovorum WPP14 0.72 HER17_RS20585 Sec-independent protein translocase subunit TatC 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli ECRC100 0.72 OKFHMN_14275 tatC Sec-independent protein translocase subunit TatC 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC102 0.72 NIAGMN_12030 tatC Sec-independent protein translocase subunit TatC 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli BW25113 0.72 b3839 tatC TatABCE protein translocation system subunit (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli BL21 0.72 ECD_03731 TatABCE protein translocation system subunit 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli ECRC98 0.72 JDDGAC_17900 tatC Sec-independent protein translocase subunit TatC 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECOR27 0.72 NOLOHH_06405 tatC Sec-independent protein translocase subunit TatC 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli ECOR38 0.72 HEPCGN_12905 tatC Sec-independent protein translocase subunit TatC 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_04213 Sec-independent protein translocase protein TatC 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli ECRC62 0.72 BNILDI_05125 tatC Sec-independent protein translocase subunit TatC 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Klebsiella pneumoniae MKP103 0.72 KDGMDA_09825 Sec-independent protein translocase subunit TatC 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.68 45
Escherichia coli ECRC99 0.72 KEDOAH_13875 tatC Sec-independent protein translocase subunit TatC 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC101 0.72 MCAODC_04780 tatC Sec-independent protein translocase subunit TatC 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Dickeya dianthicola 67-19 0.71 HGI48_RS00920 Sec-independent protein translocase subunit TatC 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Escherichia coli Nissle 1917 0.71 ECOLIN_RS22140 Sec-independent protein translocase subunit TatC 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Pantoea sp. MT58 0.71 IAI47_18260 Sec-independent protein translocase subunit TatC 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia fergusonii Becca 0.71 EFB2_04777 Sec-independent protein translocase protein TatC 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Erwinia tracheiphila SCR3 0.71 LU632_RS23980 tatC Sec-independent protein translocase subunit TatC 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_08625 tatC Sec-independent protein translocase subunit TatC 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 61
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS15240 Sec-independent protein translocase subunit TatC 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.80 51
Enterobacter sp. TBS_079 0.70 MPMX20_04442 Sec-independent protein translocase protein TatC 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Enterobacter asburiae PDN3 0.70 EX28DRAFT_4503 Twin arginine targeting (Tat) protein translocase TatC 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Shewanella loihica PV-4 0.70 Shew_3378 Sec-independent protein translocase, TatC subunit (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella sp. ANA-3 0.64 Shewana3_3730 Sec-independent protein translocase TatC (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.64 MIT1002_00508 Sec-independent protein translocase protein TatC 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS01880 twin-arginine translocase subunit TatC 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25 0.64 PFLU_RS01880 twin-arginine translocase subunit TatC 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas sp. RS175 0.63 PFR28_04982 Sec-independent protein translocase protein TatC 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_306 Twin-arginine translocation protein TatC 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. DMC3 0.63 GFF3069 Sec-independent protein translocase protein TatC 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_1569 Twin-arginine translocation protein TatC 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Marinobacter adhaerens HP15 0.63 HP15_3198 Sec-independent protein translocase, TatC subunit 0.51 HP15_527 pseudouridine synthase, RluA family — —
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_12345 twin-arginine protein translocation system subunit TatC 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D 0.28 54
Pseudomonas orientalis W4I3 0.63 QF045_RS04895 twin-arginine translocase subunit TatC 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_00590 Sec-independent protein translocase protein TatC 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_3786 Twin-arginine translocation protein TatC 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_09540 twin-arginine protein translocation system subunit TatC 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Pseudomonas simiae WCS417 0.62 PS417_01835 twin-arginine protein translocation system subunit TatC 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0382 Sec-independent periplasmic protein translocase 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas sp. SVBP6 0.62 COO64_RS13480 tatC twin-arginine translocase subunit TatC 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0382 Sec-independent periplasmic protein translocase 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas putida KT2440 0.62 PP_5018 sec-independent protein translocase protein 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Shewanella amazonensis SB2B 0.62 Sama_3207 Sec-independent periplasmic protein translocation protein TatC (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Pseudomonas sp. BP01 0.61 JOY50_RS09600 tatC twin-arginine translocase subunit TatC 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas aeruginosa MRSN321 0.61 DY961_RS11180 tatC;go_component=plasma twin-arginine translocase subunit TatC 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas aeruginosa PA14 0.61 IKLFDK_28175 twin-arginine translocase subunit TatC 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 98
Pseudomonas aeruginosa PUPa3 0.61 DQ20_RS50905 tatC;go_component=plasma twin-arginine translocase subunit TatC 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas sp. S08-1 0.60 OH686_10180 twin arginine-targeting protein translocase TatC 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase — —
Pseudomonas segetis P6 0.59 MPMX49_04265 Sec-independent protein translocase protein TatC 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_0738 Twin arginine targeting (Tat) protein translocase TatC 0.53 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.5202.1 Twin-arginine translocation protein TatC 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_12805 tatC twin-arginine translocase subunit TatC 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS13370 twin-arginine translocase subunit TatC 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Lysobacter sp. OAE881 0.49 ABIE51_RS01265 twin-arginine translocase subunit TatC 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Methylophilus sp. DMC18 0.48 GFF1574 Sec-independent protein translocase protein TatC 0.45 GFF1213 Ribosomal large subunit pseudouridine synthase D — —
Castellaniella sp019104865 MT123 0.48 ABCV34_RS11280 twin-arginine translocase subunit TatC 0.33 ABCV34_RS01885 RluA family pseudouridine synthase — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_4742 Twin-arginine translocation protein TatC 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS11070 twin-arginine translocase subunit TatC 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Rhodanobacter denitrificans MT42 0.48 LRK55_RS10775 twin-arginine translocase subunit TatC 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Acinetobacter baumannii LAC-4 0.46 RR41_RS16650 twin-arginine translocase subunit TatC 0.49 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Ralstonia solanacearum GMI1000 0.45 RS_RS14730 twin-arginine translocase subunit TatC 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS02440 twin-arginine translocase subunit TatC 0.38 ABZR87_RS13315 RluA family pseudouridine synthase 0.69 20
Ralstonia solanacearum PSI07 0.45 RPSI07_RS10450 twin-arginine translocase subunit TatC 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum UW163 0.45 UW163_RS06830 twin-arginine translocase subunit TatC 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS06785 twin-arginine translocase subunit TatC 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Acinetobacter radioresistens SK82 0.44 MPMX26_00396 Sec-independent protein translocase protein TatC 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS20285 twin-arginine protein translocation system subunit TatC 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D — —
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS03950 twin-arginine translocase subunit TatC 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Variovorax sp. OAS795 0.39 ABID97_RS23070 twin-arginine translocase subunit TatC 0.28 ABID97_RS14190 RluA family pseudouridine synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF1301 Twin-arginine translocation protein TatC 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Azospirillum sp. SherDot2 0.37 MPMX19_04320 Sec-independent protein translocase protein TatC 0.33 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D — —
Variovorax sp. SCN45 0.37 GFF5364 Twin-arginine translocation protein TatC 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS12685 twin-arginine translocase subunit TatC 0.30 AMB_RS16095 RluA family pseudouridine synthase — —
Sinorhizobium meliloti 1021 0.33 SMc02065 SEC-independent translocase transmembrane protein 0.33 SMc00647 ribosomal large subunit pseudouridine synthase — —
Rhizobium sp. OAE497 0.33 ABIE40_RS08470 twin-arginine translocase subunit TatC 0.36 ABIE40_RS14790 RluA family pseudouridine synthase — —
Rhodopseudomonas palustris CGA009 0.32 TX73_014745 twin-arginine translocase subunit TatC 0.33 TX73_001905 RluA family pseudouridine synthase — —
Agrobacterium fabrum C58 0.31 Atu1704 SEC-independent protein translocase protein 0.33 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily — —
Xanthobacter sp. DMC5 0.30 GFF557 Sec-independent protein translocase protein TatC 0.36 GFF2508 Ribosomal large subunit pseudouridine synthase D — —
Sphingobium sp. HT1-2 0.29 GFF1962 Twin-arginine translocation protein TatC 0.37 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) — —
Bosea sp. OAE506 0.29 ABIE41_RS15005 twin-arginine translocase subunit TatC 0.32 ABIE41_RS05635 RluA family pseudouridine synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS05665 twin-arginine translocase subunit TatC 0.29 A4249_RS10060 RluA family pseudouridine synthase — —
Caulobacter crescentus NA1000 0.26 CCNA_02080 Sec-independent protein translocase protein tatC 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D — —
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_02080 Sec-independent protein translocase protein tatC 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D — —
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_3486 Twin arginine targeting (Tat) protein translocase TatC 0.32 Ga0059261_0664 pseudouridine synthase, RluA family — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c10720 putative sec-independent protein translocase protein TatC 0.32 PGA1_c09000 ribosomal large subunit pseudouridine synthase D — —
Synechocystis sp000284455 PCC 6803 0.24 SGL_RS13635 twin-arginine translocase subunit TatC 0.31 SGL_RS11530 RluA family pseudouridine synthase — —
Cellulophaga baltica 18 0.24 M666_RS10580 twin-arginine translocase subunit TatC 0.29 M666_RS09010 RluA family pseudouridine synthase — —
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS05020 twin-arginine translocase subunit TatC 0.31 HMPREF1058_RS08615 RluA family pseudouridine synthase low > 67
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1578 tatC Sec-independent protein translocase TatC 0.29 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D — —
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS18845 twin-arginine translocase subunit TatC 0.31 ABI39_RS02845 RluA family pseudouridine synthase low > 72
Mycobacterium tuberculosis H37Rv 0.23 Rv2093c Sec-independent protein translocase transmembrane protein TatC 0.24 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family — —
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS18375 twin-arginine translocase subunit TatC 0.28 CA265_RS14415 pseudouridine synthase — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_1345 Sec-independent protein translocase, TatC subunit (RefSeq) 0.28 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1187 Twin arginine targeting (Tat) protein translocase TatC 0.31 Echvi_0642 pseudouridine synthase, RluA family — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS00175 twin-arginine translocase subunit TatC 0.29 ABZR88_RS03985 RluA family pseudouridine synthase — —
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS03715 twin-arginine translocase subunit TatC 0.28 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Bacteroides ovatus ATCC 8483 0.20 BACOVA_04894 twin arginine-targeting protein translocase TatC 0.30 BACOVA_03528 pseudouridine synthase, RluA family low > 96
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_17040 twin-arginine translocase subunit TatC 0.28 CA264_15205 RNA pseudouridine synthase — —

Not shown: 11 genomes with orthologs for CSW01_00470 only; 7 genomes with orthologs for CSW01_03695 only