Conservation of cofitness between CSW01_12830 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12830 RNase adaptor protein RapZ 1.0 CSW01_03470 peptide chain release factor 3 0.60 15
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS09365 RNase adapter RapZ 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 low > 74
Dickeya dadantii 3937 0.60 DDA3937_RS01515 RNase adapter RapZ 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Pantoea sp. MT58 0.60 IAI47_17200 RNase adapter RapZ 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Dickeya dianthicola 67-19 0.60 HGI48_RS01430 RNase adapter RapZ 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Pectobacterium carotovorum WPP14 0.60 HER17_RS20075 RNase adapter RapZ 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Dickeya dianthicola ME23 0.60 DZA65_RS01495 RNase adapter RapZ 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Rahnella sp. WP5 0.60 EX31_RS12385 RNase adapter RapZ 0.86 EX31_RS04095 peptide chain release factor 3 — —
Erwinia tracheiphila HP pepo 2.2 0.60 IJEDHG_13725 rapZ RNase adapter RapZ 0.85 IJEDHG_06470 prfC peptide chain release factor 3 low > 61
Erwinia tracheiphila SCR3 0.60 LU632_RS21295 rapZ RNase adapter RapZ 0.85 LU632_RS02475 prfC peptide chain release factor 3 low > 74
Klebsiella michiganensis M5al 0.60 BWI76_RS25280 RNase adaptor protein RapZ 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.86 GFF1035 Peptide chain release factor 3 low > 78
Klebsiella pneumoniae MKP103 0.60 KDGMDA_06095 RNase adapter RapZ 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Enterobacter sp. TBS_079 0.60 MPMX20_04111 RNase adapter protein RapZ 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Escherichia coli ECRC100 0.60 OKFHMN_17925 rapZ RNase adapter RapZ 0.86 OKFHMN_11280 prfC peptide chain release factor 3 0.72 74
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18440 RNase adapter RapZ 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli ECRC99 0.60 KEDOAH_10225 rapZ RNase adapter RapZ 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.60 EFB2_00618 RNase adapter protein RapZ 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC101 0.60 MCAODC_08445 rapZ RNase adapter RapZ 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 88
Escherichia coli ECRC62 0.60 BNILDI_01810 rapZ RNase adapter RapZ 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Escherichia coli ECOR27 0.60 NOLOHH_09725 rapZ RNase adapter RapZ 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 76
Escherichia coli ECRC102 0.60 NIAGMN_15685 rapZ RNase adapter RapZ 0.86 NIAGMN_09130 prfC peptide chain release factor 3 0.55 77
Escherichia coli BL21 0.60 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Escherichia coli ECRC98 0.60 JDDGAC_21550 rapZ RNase adapter RapZ 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00495 RNase adapter protein RapZ 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 0.46 22
Serratia liquefaciens MT49 0.60 IAI46_22485 RNase adapter RapZ 0.86 IAI46_02875 peptide chain release factor 3 low > 86
Escherichia coli ECOR38 0.60 HEPCGN_16800 rapZ RNase adapter RapZ 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia coli BW25113 0.60 b3205 yhbJ hypothetical protein (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Erwinia amylovora T8 0.59 OLJFJH_07055 RNase adapter RapZ 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Shewanella amazonensis SB2B 0.57 Sama_3091 hypothetical protein (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.57 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Shewanella sp. ANA-3 0.56 Shewana3_0669 hypothetical protein (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Shewanella loihica PV-4 0.55 Shew_3314 hypothetical protein (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) — —
Marinobacter adhaerens HP15 0.49 HP15_2445 protein yhbJ 0.81 HP15_541 peptide chain release factor 3 low > 73
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.69 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.69 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas sp. DMC3 0.47 GFF1825 RNase adapter protein RapZ 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Pseudomonas sp. S08-1 0.47 OH686_08560 RNase adapter protein RapZ 0.69 OH686_08765 peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_01072 RNase adapter protein RapZ 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 93
Pseudomonas sp. SVBP6 0.47 COO64_RS04270 rapZ RNase adapter RapZ 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Pseudomonas sp. RS175 0.47 PFR28_00170 RNase adapter protein RapZ 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas aeruginosa PA14 0.46 IKLFDK_01755 RNase adapter RapZ 0.69 IKLFDK_20120 peptide chain release factor 3 low > 100
Pseudomonas segetis P6 0.46 MPMX49_03861 RNase adapter protein RapZ 0.70 MPMX49_03892 Peptide chain release factor RF3 low > 75
Pseudomonas fluorescens SBW25 0.46 PFLU_RS04385 RNase adapter RapZ 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS04385 RNase adapter RapZ 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas simiae WCS417 0.46 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.69 PS417_04030 peptide chain release factor 3 — —
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2077 Predicted P-loop-containing kinase 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Pseudomonas putida KT2440 0.46 PP_0949 putative ATP-binding protein UPF0042 0.69 PP_0872 Peptide chain release factor 3 0.28 42
Pseudomonas sp. BP01 0.45 JOY50_RS11115 rapZ RNase adapter RapZ 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.52 GFF768 Peptide chain release factor 3 low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19535 nucleotide-binding protein 0.62 HSERO_RS14640 peptide chain release factor 3 low > 78
Methylophilus sp. DMC18 0.44 GFF2266 RNase adapter protein RapZ 0.58 GFF993 Peptide chain release factor 3 low > 43
Pseudomonas stutzeri RCH2 0.44 Psest_3316 Predicted P-loop-containing kinase 0.70 Psest_3351 peptide chain release factor 3 low > 67
Acidovorax sp. GW101-3H11 0.44 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Lysobacter sp. OAE881 0.44 ABIE51_RS15975 RNase adapter RapZ 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Ralstonia solanacearum GMI1000 0.43 RS_RS01995 RNase adaptor protein RapZ 0.59 RS_RS25080 peptide chain release factor 3 low > 80
Variovorax sp. SCN45 0.43 GFF2356 RNase adapter protein RapZ 0.51 GFF2045 Peptide chain release factor 3 low > 127
Ralstonia solanacearum PSI07 0.43 RPSI07_RS22155 RNase adapter RapZ 0.59 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS07035 RNase adapter RapZ 0.60 ABZR87_RS23485 peptide chain release factor 3 low > 80
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS11145 RNase adapter RapZ 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS02435 RNase adapter RapZ 0.60 UW163_RS16595 peptide chain release factor 3 — —
Rhodanobacter sp000427505 FW510-R12 0.42 LRK53_RS15720 RNase adapter RapZ 0.66 LRK53_RS04625 peptide chain release factor 3 — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19800 RNase adapter RapZ 0.66 ABZR86_RS19000 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.42 LRK55_RS12560 RNase adapter RapZ 0.66 LRK55_RS05155 peptide chain release factor 3 — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1658.1 hypothetical protein 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS12860 RNase adapter RapZ 0.66 LRK54_RS05380 peptide chain release factor 3 — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase 0.51 BPHYT_RS34275 peptide chain release factor 3 low > 109
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_02250 rapZ RNase adapter RapZ 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.68 MPMX26_00476 Peptide chain release factor RF3 low > 36
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS01735 RNase adapter RapZ 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Acinetobacter baumannii LAC-4 0.41 RR41_RS16040 RNase adapter RapZ 0.67 RR41_RS16200 peptide chain release factor 3 low > 55
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS02060 nucleotide-binding protein 0.61 RR42_RS37475 peptide chain release factor 3 low > 128
Paraburkholderia graminis OAS925 0.41 ABIE53_000714 UPF0042 nucleotide-binding protein 0.51 ABIE53_004717 peptide chain release factor 3 low > 113
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14330 RNase adapter RapZ 0.53 ABCV34_RS12505 peptide chain release factor 3 low > 48
Dechlorosoma suillum PS 0.40 Dsui_0990 putative P-loop-containing kinase 0.60 Dsui_2418 peptide chain release factor 3 low > 51
Rhodospirillum rubrum S1H 0.39 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) 0.53 Rru_A2497 Peptide chain release factor 3 (NCBI) low > 58
Azospirillum brasilense Sp245 0.39 AZOBR_RS30485 nucleotide-binding protein 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.38 MPMX19_02622 Nucleotide-binding protein 0.53 MPMX19_01192 Peptide chain release factor 3 — —
Magnetospirillum magneticum AMB-1 0.37 AMB_RS22235 RNase adaptor protein RapZ 0.54 AMB_RS01375 peptide chain release factor 3 — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c01180 Predicted P-loop-containing kinase 0.48 PGA1_c10620 peptide chain release factor 3 — —
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0424 hypothetical protein (RefSeq) 0.60 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) 0.29 48
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1631 conserved hypothetical protein (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.33 Dshi_0209 hypothetical protein (RefSeq) 0.46 Dshi_1336 peptide chain release factor 3 (RefSeq) low > 64
Sphingobium sp. HT1-2 0.32 GFF3820 RNase adapter protein RapZ 0.48 GFF3317 Peptide chain release factor 3 low > 95
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0917 Predicted P-loop-containing kinase 0.48 Ga0059261_2044 peptide chain release factor 3 low > 68

Not shown: 6 genomes with orthologs for CSW01_12830 only; 20 genomes with orthologs for CSW01_03470 only