Conservation of cofitness between CSW01_09600 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09600 DNA-binding protein HU-beta 1.0 CSW01_03470 peptide chain release factor 3 0.78 6
Alteromonas macleodii MIT1002 0.81 MIT1002_02756 hypothetical protein 0.82 MIT1002_01192 Peptide chain release factor 3 — —
Erwinia tracheiphila SCR3 0.78 LU632_RS18330 hupB DNA-binding protein HU-beta 0.85 LU632_RS02475 prfC peptide chain release factor 3 low > 73
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_16455 hupB DNA-binding protein HU-beta 0.85 IJEDHG_06470 prfC peptide chain release factor 3 — —
Klebsiella michiganensis M5al 0.76 BWI76_RS06540 DNA-binding protein HU-beta 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Klebsiella pneumoniae MKP103 0.76 KDGMDA_14625 DNA-binding protein HU-beta 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Enterobacter sp. TBS_079 0.76 MPMX20_01031 DNA-binding protein HU-beta 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03233 DNA-binding protein HU-beta 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 low > 74
Pantoea sp. MT58 0.75 IAI47_14640 DNA-binding protein HU-beta 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Shewanella sp. ANA-3 0.75 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4356 DNA-binding protein HU-beta 0.86 GFF1035 Peptide chain release factor 3 low > 78
Rahnella sp. WP5 0.75 EX31_RS22260 DNA-binding protein HU-beta 0.86 EX31_RS04095 peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.75 IAI46_05025 DNA-binding protein HU-beta 0.86 IAI46_02875 peptide chain release factor 3 low > 87
Escherichia coli BW25113 0.75 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli BL21 0.75 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Escherichia fergusonii Becca 0.75 EFB2_03617 DNA-binding protein HU-beta 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS10555 DNA-binding protein HU-beta 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 low > 74
Shewanella loihica PV-4 0.74 Shew_2505 histone family protein DNA-binding protein (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS20745 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.69 DY961_RS13355 peptide chain release factor 3 — —
Pseudomonas sp. S08-1 0.74 OH686_03630 DNA-binding protein HU-beta 0.69 OH686_08765 peptide chain release factor 3 — —
Dickeya dianthicola ME23 0.74 DZA65_RS06025 DNA-binding protein HU-beta 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Escherichia coli ECRC102 0.74 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.86 NIAGMN_09130 prfC peptide chain release factor 3 low > 80
Escherichia coli ECRC101 0.74 MCAODC_27540 hupB DNA-binding protein HU-beta 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Dickeya dianthicola 67-19 0.74 HGI48_RS05700 DNA-binding protein HU-beta 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Escherichia coli ECRC98 0.74 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Pseudomonas aeruginosa PA14 0.74 IKLFDK_08765 DNA-binding protein HU-beta 0.69 IKLFDK_20120 peptide chain release factor 3 — —
Dickeya dadantii 3937 0.74 DDA3937_RS05655 DNA-binding protein HU-beta 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Escherichia coli ECRC99 0.74 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC100 0.74 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Escherichia coli ECRC62 0.74 BNILDI_22665 hupB DNA-binding protein HU-beta 0.86 BNILDI_08000 prfC peptide chain release factor 3 0.63 9
Escherichia coli ECOR38 0.74 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia coli ECOR27 0.74 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 76
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS54825 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.69 DQ20_RS48655 peptide chain release factor 3 — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS15835 DNA-binding protein HU-beta 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Erwinia amylovora T8 0.73 OLJFJH_17955 DNA-binding protein HU-beta 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Pseudomonas stutzeri RCH2 0.73 Psest_2284 Bacterial nucleoid DNA-binding protein 0.70 Psest_3351 peptide chain release factor 3 — —
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Marinobacter adhaerens HP15 0.72 HP15_2182 histone-like bacterial DNA-binding protein 0.81 HP15_541 peptide chain release factor 3 — —
Pseudomonas putida KT2440 0.72 PP_2303 DNA binding regulator, beta subunit B 0.69 PP_0872 Peptide chain release factor 3 — —
Shewanella amazonensis SB2B 0.72 Sama_1227 HU family DNA-binding protein (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) — —
Pseudomonas sp. BP01 0.71 JOY50_RS25900 HU family DNA-binding protein 0.69 JOY50_RS22670 peptide chain release factor 3 — —
Pseudomonas orientalis W4I3 0.69 QF045_RS18885 HU family DNA-binding protein 0.69 QF045_RS07015 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS19155 HU family DNA-binding protein 0.69 PFLU_RS04070 peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.69 PS417_17220 transcriptional regulator HU subunit alpha 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas sp. SVBP6 0.69 COO64_RS19210 HU family DNA-binding protein 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS19155 HU family DNA-binding protein 0.69 PFLU_RS04070 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS09465 transcriptional regulator 0.51 BPHYT_RS34275 peptide chain release factor 3 low > 109
Pseudomonas sp. DMC3 0.68 GFF1446 DNA-binding protein HU-beta 0.69 GFF5016 Peptide chain release factor RF3 — —
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS21970 HU family DNA-binding protein 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Acidovorax sp. GW101-3H11 0.68 Ac3H11_376 DNA-binding protein HU-beta 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_20190 DNA-binding protein HU 0.69 AO353_05420 peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2555 DNA-binding protein HU-beta 0.69 PfGW456L13_5060 Peptide chain release factor 3 — —
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2215 DNA-binding protein HU-beta 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_01735 DNA-binding protein HU 0.69 AO356_07285 peptide chain release factor 3 — —
Paraburkholderia graminis OAS925 0.67 ABIE53_002118 DNA-binding protein HU-beta 0.51 ABIE53_004717 peptide chain release factor 3 low > 113
Dechlorosoma suillum PS 0.67 Dsui_2199 bacterial nucleoid DNA-binding protein 0.60 Dsui_2418 peptide chain release factor 3 low > 51
Castellaniella sp019104865 MT123 0.67 ABCV34_RS06640 HU family DNA-binding protein 0.53 ABCV34_RS12505 peptide chain release factor 3 — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS07315 HU family DNA-binding protein 0.66 ABZR86_RS19000 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16740 HU family DNA-binding protein 0.66 LRK54_RS05380 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16465 HU family DNA-binding protein 0.66 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter sp000427505 FW510-R12 0.66 LRK53_RS12130 HU family DNA-binding protein 0.66 LRK53_RS04625 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08025 himA integration host factor subunit alpha 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Variovorax sp. SCN45 0.66 GFF2853 DNA-binding protein HU-beta 0.51 GFF2045 Peptide chain release factor 3 low > 127
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS12900 transcriptional regulator HU subunit alpha 0.62 HSERO_RS14640 peptide chain release factor 3 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3853 DNA-binding protein HU-beta 0.52 GFF768 Peptide chain release factor 3 low > 90
Acinetobacter baumannii LAC-4 0.64 RR41_RS12365 HU family DNA-binding protein 0.67 RR41_RS16200 peptide chain release factor 3 — —
Acinetobacter radioresistens SK82 0.63 MPMX26_01331 DNA-binding protein HU-beta 0.68 MPMX26_00476 Peptide chain release factor RF3 — —
Lysobacter sp. OAE881 0.61 ABIE51_RS14140 HU family DNA-binding protein 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Ralstonia solanacearum UW163 0.59 UW163_RS14645 HU family DNA-binding protein 0.60 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum GMI1000 0.59 RS_RS08660 HU family DNA-binding protein 0.59 RS_RS25080 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS01335 HU family DNA-binding protein 0.60 RALBFv3_RS23345 peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS16140 HU family DNA-binding protein 0.59 RPSI07_RS07810 peptide chain release factor 3 — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS12780 HU family DNA-binding protein 0.60 ABZR87_RS23485 peptide chain release factor 3 low > 80
Magnetospirillum magneticum AMB-1 0.55 AMB_RS14030 HU family DNA-binding protein 0.54 AMB_RS01375 peptide chain release factor 3 — —
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_0103 Bacterial nucleoid DNA-binding protein 0.48 Ga0059261_2044 peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.54 MPMX19_01544 DNA-binding protein HU 0.53 MPMX19_01192 Peptide chain release factor 3 — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) — —
Bacteroides thetaiotaomicron VPI-5482 0.53 BT2830 DNA-binding protein HU-beta (NCBI ptt file) 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Rhodospirillum rubrum S1H 0.53 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.53 Rru_A2497 Peptide chain release factor 3 (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.60 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) low > 51
Azospirillum brasilense Sp245 0.52 AZOBR_RS33080 transcriptional regulator 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Bacteroides ovatus ATCC 8483 0.51 BACOVA_02078 DNA-binding protein HU 0.47 BACOVA_04458 peptide chain release factor 3 low > 96
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS01105 HU family DNA-binding protein 0.46 HMPREF1181_RS05585 peptide chain release factor 3 0.34 29
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS10500 HU family DNA-binding protein 0.47 HMPREF1058_RS07935 peptide chain release factor 3 — —
Methylophilus sp. DMC18 0.48 GFF1306 DNA-binding protein HU-beta 0.58 GFF993 Peptide chain release factor 3 low > 43
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02036 DNA-binding protein HU 0.44 CCNA_01123 peptide chain release factor RF-3 low > 67
Caulobacter crescentus NA1000 0.46 CCNA_02036 DNA-binding protein HU 0.44 CCNA_01123 peptide chain release factor RF-3 low > 66
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS22675 integration host factor subunit beta 0.46 CA265_RS18435 peptide chain release factor 3 — —

Not shown: 5 genomes with orthologs for CSW01_09600 only; 21 genomes with orthologs for CSW01_03470 only