Conservation of cofitness between CSW01_03400 and CSW01_01830 in Vibrio cholerae E7946 ATCC 55056

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.53 6
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.70 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.70 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.69 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.69 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.71 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.73 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.70 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.72 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.91 54
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.72 OHPLBJKB_03871 tRNA dimethylallyltransferase — —
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.72 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) low > 76
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.71 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.71 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.72 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase low > 60
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.71 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC101 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.71 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.71 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 52
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.71 EFB2_04364 tRNA dimethylallyltransferase low > 86
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.71 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.72 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.72 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.71 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.71 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.71 MPMX20_00452 tRNA dimethylallyltransferase low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.68 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.70 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.63 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.63 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.62 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.60 B158DRAFT_1951 tRNA dimethylallyltransferase low > 40
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.57 MIT1002_03789 tRNA dimethylallyltransferase — —
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.58 PP_4895 tRNA dimethylallyltransferase low > 96
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.58 Psest_0682 tRNA dimethylallyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Marinobacter adhaerens HP15 0.46 HP15_3065 tRNA pseudouridine synthase B 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.37 35
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.62 AO353_13140 tRNA dimethylallyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.62 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.63 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.62 PFR28_05120 tRNA dimethylallyltransferase — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.57 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.63 AO356_08660 tRNA dimethylallyltransferase low > 104
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.39 4
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS17985 tRNA pseudouridine synthase B 0.51 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Dechlorosoma suillum PS 0.42 Dsui_2720 tRNA pseudouridine 55 synthase 0.49 Dsui_1552 tRNA isopentenyltransferase MiaA — —
Ralstonia solanacearum GMI1000 0.41 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.48 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS12835 tRNA pseudouridine synthase B 0.46 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Paraburkholderia graminis OAS925 0.40 ABIE53_001832 tRNA pseudouridine55 synthase 0.49 ABIE53_000875 tRNA dimethylallyltransferase 0.28 30
Ralstonia solanacearum UW163 0.40 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.48 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.48 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.48 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.49 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B 0.47 BPHYT_RS03645 tRNA dimethylallyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B 0.48 H281DRAFT_04711 tRNA dimethylallyltransferase — —
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.49 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Acinetobacter radioresistens SK82 0.38 MPMX26_02778 tRNA pseudouridine synthase B 0.42 MPMX26_01208 tRNA dimethylallyltransferase — —
Variovorax sp. OAS795 0.37 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.45 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Variovorax sp. SCN45 0.36 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.47 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Lysobacter sp. OAE881 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 62
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.50 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.50 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.50 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 59
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.49 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Rhodopseudomonas palustris CGA009 0.33 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.28 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Azospirillum sp. SherDot2 0.33 MPMX19_02524 tRNA pseudouridine synthase B 0.27 MPMX19_01778 tRNA dimethylallyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Caulobacter crescentus NA1000 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.26 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.26 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Bosea sp. OAE506 0.30 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB 0.24 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 77
Dinoroseobacter shibae DFL-12 0.30 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.17 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.27 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 64
Agrobacterium fabrum C58 0.29 Atu0085 tRNA pseudouridine 55 synthase 0.30 Atu2039 tRNA delta(2)-isopentenylpyrophosphate — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c32950 tRNA pseudouridine synthase B 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA — —
Rhizobium sp. OAE497 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB 0.29 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Sinorhizobium meliloti 1021 0.28 SMc00321 tRNA pseudouridine synthase B 0.31 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Rhodospirillum rubrum S1H 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.21 Rru_A0466 tRNA isopentenyltransferase (NCBI) — —
Fusobacterium nucleatum SB010 0.26 HUW76_06175 tRNA pseudouridine(55) synthase TruB 0.27 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 35
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.28 Ga0059261_0069 tRNA dimethylallyltransferase low > 68
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.31 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase low > 38

Not shown: 0 genomes with orthologs for CSW01_03400 only; 19 genomes with orthologs for CSW01_01830 only