Conservation of cofitness between CSW01_12250 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 1.0 CSW01_00650 tyrosine recombinase XerC 0.91 1
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD 0.54 HER17_RS01350 tyrosine recombinase XerC 0.84 2
Erwinia amylovora T8 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.54 5
Erwinia tracheiphila SCR3 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Rahnella sp. WP5 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD 0.56 EX31_RS15165 tyrosine recombinase XerC 0.78 1
Serratia liquefaciens MT49 0.69 IAI46_20730 site-specific tyrosine recombinase XerD 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Pantoea sp. MT58 0.69 IAI47_03820 site-specific tyrosine recombinase XerD 0.53 IAI47_18400 tyrosine recombinase XerC 0.48 3
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.68 MPMX20_03753 Tyrosine recombinase XerD 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.67 1
Dickeya dadantii 3937 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2945 tyrosine recombinase XerD 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Klebsiella pneumoniae MKP103 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 95
Dickeya dianthicola ME23 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD 0.56 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.52 28
Klebsiella michiganensis M5al 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD 0.55 BWI76_RS01210 tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.79 7
Escherichia coli ECRC100 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Escherichia coli ECRC98 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.62 4
Escherichia fergusonii Becca 0.67 EFB2_01007 Tyrosine recombinase XerD 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli ECRC62 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli Nissle 1917 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.61 5
Escherichia coli BL21 0.67 ECD_02726 site-specific tyrosine recombinase 0.55 ECD_03687 site-specific tyrosine recombinase 0.60 1
Escherichia coli ECRC99 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC 0.52 16
Escherichia coli ECRC102 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2991 Tyrosine recombinase XerD 0.55 GFF239 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_04365 recombinase XerD 0.38 AO353_09050 recombinase XerC 0.51 3
Pseudomonas sp. SVBP6 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.45 2
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_06385 recombinase XerD 0.38 AO356_12725 recombinase XerC 0.59 1
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC — —
Pseudomonas sp. DMC3 0.58 GFF1987 Tyrosine recombinase XerD 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. RS175 0.58 PFR28_00331 Tyrosine recombinase XerD 0.38 PFR28_04378 Tyrosine recombinase XerC 0.54 5
Pseudomonas putida KT2440 0.58 PP_1468 Tyrosine recombinase XerD 0.39 PP_5230 Tyrosine recombinase XerC 0.41 4
Pseudomonas sp. BP01 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.39 24
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas simiae WCS417 0.57 PS417_22895 tyrosine recombinase XerD 0.34 PS417_27595 recombinase XerC 0.38 36
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.40 8
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.66 1
Pseudomonas aeruginosa PA14 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD 0.40 IKLFDK_27050 tyrosine recombinase XerC — —
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC 0.27 53
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC low > 101
Shewanella oneidensis MR-1 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.79 1
Shewanella sp. ANA-3 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.55 1
Pseudomonas orientalis W4I3 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas sp. S08-1 0.56 OH686_17750 tyrosine recombinase XerD 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas segetis P6 0.55 MPMX49_01575 Tyrosine recombinase XerD 0.40 MPMX49_04536 Tyrosine recombinase XerC — —
Shewanella amazonensis SB2B 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.51 3
Alteromonas macleodii MIT1002 0.55 MIT1002_00786 Tyrosine recombinase XerD 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas stutzeri RCH2 0.54 Psest_3129 tyrosine recombinase XerD 0.40 Psest_3767 tyrosine recombinase XerC 0.31 1
Shewanella loihica PV-4 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Lysobacter sp. OAE881 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.84 5
Marinobacter adhaerens HP15 0.53 HP15_762 site-specific tyrosine recombinase XerD 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.51 1
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_2265 tyrosine recombinase XerD 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.84 1
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS15950 tyrosine recombinase XerD 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04126 integrase/recombinase XerD 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.48 41
Paraburkholderia graminis OAS925 0.50 ABIE53_003361 integrase/recombinase XerD 0.33 ABIE53_000426 integrase/recombinase XerC — —
Methylophilus sp. DMC18 0.50 GFF2342 Tyrosine recombinase XerD 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.26 70
Ralstonia solanacearum GMI1000 0.50 RS_RS12755 tyrosine recombinase XerD 0.34 RS_RS00260 Tyrosine recombinase XerC 1 — —
Ralstonia solanacearum UW163 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.49 Dsui_1217 tyrosine recombinase XerD 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.35 HSERO_RS21475 recombinase XerC low > 78
Acidovorax sp. GW101-3H11 0.48 Ac3H11_302 Tyrosine recombinase XerD 0.31 Ac3H11_1995 Tyrosine recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS03345 recombinase XerD 0.31 RR42_RS00615 recombinase XerC 0.45 8
Variovorax sp. OAS795 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.67 1
Variovorax sp. SCN45 0.47 GFF2772 Site-specific tyrosine recombinase XerD 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF5461 Tyrosine recombinase XerD 0.31 GFF547 Tyrosine recombinase XerC 0.40 59
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.59 4
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.64 8
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Rhizobium sp. OAE497 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.25 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Rhodopseudomonas palustris CGA009 0.36 TX73_002625 site-specific tyrosine recombinase XerD 0.22 TX73_000945 tyrosine recombinase XerC 0.61 1
Agrobacterium fabrum C58 0.35 Atu3629 site-specific tyrosine recombinase XerD 0.24 Atu2628 site-specific recombinase — —
Azospirillum brasilense Sp245 0.34 AZOBR_RS03240 recombinase XerD 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —
Bacteroides ovatus ATCC 8483 0.33 BACOVA_02123 tyrosine recombinase XerD 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.33 BT2843 integrase (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Bosea sp. OAE506 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.58 8
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS07000 site-specific tyrosine recombinase XerD 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase — —
Magnetospirillum magneticum AMB-1 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_3595 Site-specific recombinase XerD 0.22 Ga0059261_2764 Site-specific recombinase XerD 0.50 1

Not shown: 23 genomes with orthologs for CSW01_12250 only; 1 genomes with orthologs for CSW01_00650 only